Vivek Krishnakumar
Vivek Krishnakumar
Verified email at illumina.com - Homepage
Title
Cited by
Cited by
Year
The Medicago genome provides insight into the evolution of rhizobial symbioses
ND Young, F Debellé, GED Oldroyd, R Geurts, SB Cannon, MK Udvardi, ...
Nature 480 (7378), 520-524, 2011
10962011
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
CY Cheng, V Krishnakumar, AP Chan, F Thibaud‐Nissen, S Schobel, ...
The Plant Journal 89 (4), 789-804, 2017
3332017
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale, WE Clarke, CD Town, ...
Genome biology 15 (6), 1-18, 2014
3062014
An improved genome release (version Mt4. 0) for the model legume Medicago truncatula
H Tang, V Krishnakumar, S Bidwell, B Rosen, A Chan, S Zhou, ...
BMC genomics 15 (1), 312, 2014
2792014
Araport: the Arabidopsis information portal
V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ...
Nucleic acids research 43 (D1), D1003-D1009, 2015
1692015
ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology
J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi, M Cumming, LA Kelley, ...
The Plant Cell 29 (8), 1806-1821, 2017
1192017
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar, H Tang, ...
Elife 5, e19090, 2016
782016
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
S Chamala, N García, GT Godden, V Krishnakumar, IE Jordon‐Thaden, ...
Applications in Plant Sciences 3 (4), 1400115, 2015
782015
MTGD: The Medicago truncatula Genome Database
V Krishnakumar, M Kim, BD Rosen, S Karamycheva, SL Bidwell, H Tang, ...
Plant and Cell Physiology 56 (1), e1-e1, 2015
602015
ThaleMine: a warehouse for Arabidopsis data integration and discovery
V Krishnakumar, S Contrino, CY Cheng, I Belyaeva, ES Ferlanti, JR Miller, ...
Plant and Cell Physiology 58 (1), e4-e4, 2017
252017
A maize database resource that captures tissue-specific and subcellular-localized gene expression, via fluorescent tags and confocal imaging (Maize Cell Genomics Database)
V Krishnakumar, Y Choi, E Beck, Q Wu, A Luo, A Sylvester, D Jackson, ...
Plant and Cell Physiology 56 (1), e12-e12, 2015
182015
Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome
X Zhang, BD Rosen, H Tang, V Krishnakumar, CD Town
PLoS One 10 (2), e0117699, 2015
172015
Araport: an application platform for data discovery
MR Hanlon, M Vaughn, S Mock, R Dooley, W Moreira, J Stubbs, C Town, ...
Concurrency and Computation: Practice and Experience 27 (16), 4412-4422, 2015
92015
Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena
J Xiong, W Yang, K Chen, C Jiang, Y Ma, X Chai, G Yan, G Wang, D Yuan, ...
PLoS biology 17 (6), e3000294, 2019
82019
An ‘eFP‐Seq Browser’for visualizing and exploring RNA sequencing data
A Sullivan, PK Purohit, NH Freese, A Pasha, E Esteban, J Waese, A Wu, ...
The Plant Journal 100 (3), 641-654, 2019
72019
A web-based software system for dynamic gene cluster comparison across multiple genomes
KV Revanna, V Krishnakumar, Q Dong
Bioinformatics 25 (7), 956-957, 2009
62009
The arabidopsis information portal: an application platform for data discovery
MR Hanlon, M Vaughn, S Mock, R Dooley, W Moreira, J Stubbs, C Town, ...
2014 9th Gateway Computing Environments Workshop, 38-41, 2014
32014
The Federated Plant Database Initiative for the Legumes
A Farmer, JD Campbell, S Dash, W Huang, M O'Connell, A Wilkey, ...
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0
MARKERMINER 1.0: Anew APPLICATION FOR PHYLOGENETIC
V KRISHNAKUMAR, IE JORDON-THADEN, R DE SMET, WB BARBAZUK, ...
Shrub willow
F Gouker, M Serapiglia, L Smart, C Town, H Tang, V Krishnakumar, ...
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