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Sergey Khayrulin
Sergey Khayrulin
A.P. Ershov INSTITUTE OF INFORMATICS SYSTEMS Russian Academy of Sciences Siberian Branch
Verified email at iis.nsk.su - Homepage
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OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
1522014
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
1122018
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3-4), 137-147, 2012
472012
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
422016
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
282018
Software tools for cell walls segmentation in microphotography
GB Abdikerimova, J Tussupov, FA Murzin, S Khayrulin, AL Bychkov, ...
Journal of Theoretical and Applied Information Technology 96 (15), 4783-4793, 2018
72018
The OpenWorm Project: currently available resources and future plans
P Gleeson, M Cantarelli, M Currie, J Hokanson, G Idili, S Khayrulin, ...
BMC neuroscience 16 (1), 1-2, 2015
72015
The NeuroML C. elegans connectome
T Busbice, P Gleeson, S Khayrulin, M Cantarelli, A Dibert, G Idili, ...
Neuroinf. Abstract book, 82-83, 2012
72012
Sibernetic: a software complex based on the PCI SPH algorithm aimed at simulation problems in biomechanics
AY Palyanov, SS Khayrulin
Russian Journal of Genetics: Applied Research 5, 635-641, 2015
52015
Integration of predictive-corrective incompressible SPH and Hodgkin-Huxley based models in the OpenWorm in silico model of C. elegans
M Vella, A Palyanov, P Gleeson, S Khayrulin
BMC Neuroscience 14, 1-1, 2013
52013
Analysis of images obtained by the transmission electronic microscopy
GB Abdikerimova, AL Bychkov, SS Khayrulin, FA Murzin, NE Russkikh, ...
Materials Today: Proceedings 12, 90-92, 2019
42019
OpenWorm: an open-science approach to modeling caenorhabditis elegans. Frontiers Computational Neuroscience 2014; 8
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
42014
Managing complexity in multi-algorithm, multi-scale biological simulations: an integrated software engineering and neuroinformatics approach
G Idili, M Cantarelli, M Buibas, T Busbice, J Coggan, C Grove, S Khayrulin, ...
Frontiers in Neuroinformatics Conference Abstract: 4th INCF Congress of …, 2011
32011
A Simplified Cell Network for the Simulation of C. elegans' Forward Crawling
D Lung, S Larson, A Palyanov, S Khayrulin, P Gleeson, M Zimmer, ...
Proceedings of the Workshop on Worm´ s Neural Information Processing at the …, 2017
12017
Realistic 3D simulation of C. elegans swimming and crawling with Sibernetic environment
AY Palyanov, SS Khayrulin
Mathematical Modeling and High Performance Computing in Bioinformatics …, 2016
12016
Distributed calculations on multiple independent devices for PCISPH method
S Khayrulin
Bulletin of the Novosibirsk Computing Center. Series: Computer Science, 59-68, 2021
2021
Algorithms of distributed computation on heterogeneous systems with many devices for PCI SPH methods
SS Khayrulin
Марчуковские научные чтения, 183-184, 2020
2020
Algorithms and software tools for analysis of textural images
GB Abdikerimova, AL Bychkov, W Xinyu, FA Murzin, NE Russkikh, ...
Science Intensive Software, 6-13, 2019
2019
PROCESSING IMAGES OBTAINED BY THE TRANSMISSION ELECTRON MICROSCOPY
GB Abdikerimova, AL Bychkov, SS Khayrulin, FA Murzin, NE Russkikh, ...
Fundamental Bases of Mechanochemical Technologies, 52-52, 2018
2018
A SOFTWARE TOOL FOR VISUALIZATION AND CONTROL OF BIOLOGICAL NEURAL NETWORKS ACTIVITY BASED ON THE NEURON SIMULATION ENVIRONMENT
SS Khayrulin, NA Serdtseva, AY Palyanov
Mathematical Modeling and High Performance Computing in Bioinformatics …, 2016
2016
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