Sohta A. Ishikawa
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A fast likelihood method to reconstruct and visualize ancestral scenarios
SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel
Molecular biology and evolution 36 (9), 2069-2085, 2019
Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista
A Yabuki, R Kamikawa, SA Ishikawa, M Kolisko, E Kim, AS Tanabe, ...
Scientific reports 4 (1), 1-6, 2014
Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa
R Kamikawa, M Kolisko, Y Nishimura, A Yabuki, MW Brown, SA Ishikawa, ...
Genome biology and evolution 6 (2), 306-315, 2014
Proposal of a twin aarginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes
R Kamikawa, G Tanifuji, SA Ishikawa, KI Ishii, Y Matsuno, NT Onodera, ...
Molecular biology and evolution 32 (10), 2598-2604, 2015
Ungulate malaria parasites
TJ Templeton, M Asada, M Jiratanh, SA Ishikawa, S Tiawsirisup, ...
Scientific reports 6 (1), 1-8, 2016
RY-coding and non-homogeneous models can ameliorate the maximum-likelihood inferences from nucleotide sequence data with parallel compositional heterogeneity
SA Ishikawa, Y Inagaki, T Hashimoto
Evolutionary Bioinformatics 8, EBO. S9017, 2012
Multigene phylogenetic analyses including diverse radiolarian species support the “Retaria” hypothesis—The sister relationship of Radiolaria and Foraminifera
Y Ishitani, SA Ishikawa, Y Inagaki, M Tsuchiya, K Takahashi, K Takishita
Marine Micropaleontology 81 (1-2), 32-42, 2011
Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including parasitic species for better understanding transitions from a free-living to a …
E Yazaki, SA Ishikawa, K Kume, A Kumagai, T Kamaishi, G Tanifuji, ...
Genes & genetic systems, 16-00056, 2017
New records and molecular characterization of Acrozoanthus (Cnidaria: Anthozoa: Hexacorallia) and its endosymbionts (Symbiodinium spp.) from Taiwan
JD Reimer, SA Ishikawa, M Hirose
Marine Biodiversity 41 (2), 313-323, 2011
A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum
T Matsumoto, SA Ishikawa, T Hashimoto, Y Inagaki
Molecular phylogenetics and evolution 60 (1), 68-72, 2011
Identification of a bacteria-like ferrochelatase in Strongyloides venezuelensis, an animal parasitic nematode
E Nagayasu, SA Ishikawa, S Taketani, G Chakraborty, A Yoshida, ...
PloS one 8 (3), e58458, 2013
Ungulate malaria parasites. Sci Rep 6: 23230
TJ Templeton, M Asada, M Jiratanh, SA Ishikawa, S Tiawsirisup, ...
Multiple conversion between the genes encoding bacterial class-I release factors
SA Ishikawa, R Kamikawa, Y Inagaki
Scientific reports 5 (1), 1-15, 2015
MPI/OpenMP HYBRID Parallelization of Phylogenetic Analyses based on Non-Homogeneous Substitution Models:Implementation and Performance Evaluation for Large-Scale Computing Systems.
SA Ishikawa, M Nakao, I Yuji, T Hashimoto, M Sato
IPSJ Transactions on Advanced Computing Systems 7 (3), 13-24, 2014
Hybrid MPI/OpenMP parallelization of a phylogenetic program with Non-Homogeneous models: toward the analyses of large-scale sequence datasets.
SA Ishikawa, M Nakao, Y Inagaki, T Hashimoto, M Sato
High Performance Computing Symposium 2014, 10-20, 2014
Microscopic observation of laminated sediment in thin section using diatom assemblages to reconstruct annual paleoenvironmental changes
S Ishikawa, K Kaoru
AGU Fall Meeting Abstracts 2013, PP11C-1843, 2013
Assessment of the performance of phylogenetic inference based on simulated protein-coding sequences with significant compositional heterogeneity
SA Ishikawa, T Hashimoto
統計数理 60 (2), 289-303, 2012
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