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Shubhada R. Kulkarni
Shubhada R. Kulkarni
Postdoctoral Researcher, DKFZ, Heidelberg
Verified email at dkfz-heidelberg.de
Title
Cited by
Cited by
Year
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
13232018
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
SR Kulkarni, D Vaneechoutte, J Van de Velde, K Vandepoele
Nucleic acids research 46 (6), e31-e31, 2018
892018
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development
J Van Leene, J Blomme, SR Kulkarni, B Cannoot, N De Winne, ...
Journal of experimental botany, erw347, 2016
492016
A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie–Wnt signaling axis in the liver
D Inverso, J Shi, KH Lee, M Jakab, S Ben-Moshe, SR Kulkarni, ...
Developmental cell 56 (11), 1677-1693. e10, 2021
202021
Inference of plant gene regulatory networks using data-driven methods: A practical overview
SR Kulkarni, K Vandepoele
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194447, 2020
172020
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)
K De Schutter, M Tsaneva, SR Kulkarni, P Rougé, K Vandepoele, ...
Rice 10 (1), 1-19, 2017
172017
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
J Vercruysse, M Van Bel, CM Osuna‐Cruz, SR Kulkarni, V Storme, ...
Plant biotechnology journal 18 (2), 553-567, 2020
152020
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants
N Besbrugge, J Van Leene, D Eeckhout, B Cannoot, SR Kulkarni, ...
Plant Physiology 177 (2), 447-464, 2018
152018
Temporal multi-omics identifies LRG1 as a vascular niche instructor of metastasis
M Singhal, N Gengenbacher, AA Abdul Pari, M Kamiyama, L Hai, ...
Science Translational Medicine 13 (609), eabe6805, 2021
132021
Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data
SR Kulkarni, DM Jones, K Vandepoele
Plant physiology 181 (2), 412-425, 2019
132019
Erratum: JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Oxford University Press, 2018
12018
Lung endothelium instructs dormancy of susceptible metastatic tumour cells
M Jakab, KH Lee, A Uvarovskii, S Ovchinnikova, SR Kulkarni, T Rostalski, ...
bioRxiv, 2022
2022
Enhanced TF binding site maps improve regulatory networks learned from accessible chromatin data
SR Kulkarni, DM Jones, K Vandepoele
bioRxiv, 545780, 2019
2019
Delineating gene regulatory networks in Arabidopsis thaliana
SR Kulkarni
Ghent University, 2019
2019
JASPAR: an open-access database of transcription factor binding profiles
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
F1000Research 7, 2018
2018
Erratum. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
R van der Lee, B Ballester, F Parcy, A Khan, O Fornés, A Stigliani, ...
HAL CCSD, 2018
2018
AUTHOR CONTRIBUTIONS
SR Kulkarni, DM Jones, K Vandepoele
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Articles 1–17