| Cell illustrator 4.0: a computational platform for systems biology M Nagasaki, A Saito, E Jeong, C Li, K Kojima, E Ikeda, S Miyano In silico biology 10 (1-2), 5-26, 2010 | 109 | 2010 |
| Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets L Chen, G Qi-Wei, M Nakata, H Matsuno, S Miyano Journal of biosciences 32, 113-127, 2007 | 87 | 2007 |
| Whole exome sequencing identified a novel DAG1 mutation in a patient with rare, mild and late age of onset muscular dystrophy‐dystroglycanopathy Y Dai, S Liang, X Dong, Y Zhao, H Ren, Y Guan, H Yin, C Li, L Chen, ... Journal of cellular and molecular medicine 23 (2), 811-818, 2019 | 67 | 2019 |
| Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension C Li, M Nagasaki, K Ueno, S Miyano BMC systems biology 3, 1-35, 2009 | 61 | 2009 |
| Petri net based descriptions for systematic understanding of biological pathways H Matsuno, C Li, S Miyano IEICE Transactions on Fundamentals of Electronics, Communications and …, 2006 | 58 | 2006 |
| Whole exome sequencing identified a homozygous novel variant in CEP290 gene causes Meckel syndrome R Zhang, S Chen, P Han, F Chen, S Kuang, Z Meng, J Liu, R Sun, Z Wang, ... Journal of Cellular and Molecular Medicine 24 (2), 1906-1916, 2020 | 57 | 2020 |
| Identification and functional characterization of mutations in LPL gene causing severe hypertriglyceridaemia and acute pancreatitis P Han, G Wei, K Cai, X Xiang, WP Deng, YB Li, S Kuang, Z Dong, ... Journal of Cellular and Molecular Medicine 24 (2), 1286-1299, 2020 | 55 | 2020 |
| Structural modeling and analysis of signaling pathways based on Petri nets C Li, S Suzuki, QW Ge, M Nakata, H Matsuno, S Miyano Journal of bioinformatics and computational biology 4 (05), 1119-1140, 2006 | 48 | 2006 |
| A MYBL2 complex for RRM2 transactivation and the synthetic effect of MYBL2 knockdown with WEE1 inhibition against colorectal cancer Q Liu, L Guo, H Qi, M Lou, R Wang, B Hai, K Xu, L Zhu, Y Ding, C Li, L Xie, ... Cell Death & Disease 12 (7), 683, 2021 | 30 | 2021 |
| STAT3 activates MSK1-mediated histone H3 phosphorylation to promote NFAT signaling in gastric carcinogenesis H Qi, Z Yang, C Dai, R Wang, X Ke, S Zhang, X Xiang, K Chen, C Li, J Luo, ... Oncogenesis 9 (2), 15, 2020 | 28 | 2020 |
| Online model checking approach based parameter estimation to a neuronal fate decision simulation model in Caenorhabditis elegans with hybrid functional Petri net with extension C Li, M Nagasaki, CH Koh, S Miyano Molecular Biosystems 7 (5), 1576-1592, 2011 | 25 | 2011 |
| Systematic reconstruction of TRANSPATH data into cell system markup language M Nagasaki, A Saito, C Li, E Jeong, S Miyano BMC Systems Biology 2, 1-17, 2008 | 22 | 2008 |
| In silico analysis of all point mutations on the 2B domain of K5/K14 causing epidermolysis bullosa simplex: a genotype–phenotype correlation S Banerjee, Q Wu, P Yu, M Qi, C Li Molecular Biosystems 10 (10), 2567-2577, 2014 | 21 | 2014 |
| Drosophila Pif1A is essential for spermatogenesis and is the homolog of human CCDC157, a gene associated with idiopathic NOA X Yuan, H Zheng, Y Su, P Guo, X Zhang, Q Zhao, W Ge, C Li, Y Xi, ... Cell death & disease 10 (2), 125, 2019 | 19 | 2019 |
| Lipidomic alterations and PPARα activation induced by resveratrol lead to reduction in lesion size in endometriosis models Z Chen, C Wang, C Lin, L Zhang, H Zheng, Y Zhou, X Li, C Li, X Zhang, ... Oxidative medicine and cellular longevity 2021, 1-21, 2021 | 18 | 2021 |
| PHC1 maintains pluripotency by organizing genome-wide chromatin interactions of the Nanog locus L Chen, Q Tong, X Chen, P Jiang, H Yu, Q Zhao, L Sun, C Liu, B Gu, ... Nature Communications 12 (1), 2829, 2021 | 16 | 2021 |
| Integrative analysis reveals across-cancer expression patterns and clinical relevance of ribonucleotide reductase in human cancers Y Ding, T Zhong, M Wang, X Xiang, G Ren, Z Jia, Q Lin, Q Liu, J Dong, ... Frontiers in oncology 9, 956, 2019 | 14 | 2019 |
| MIRACH: efficient model checker for quantitative biological pathway models CH Koh, M Nagasaki, A Saito, C Li, L Wong, S Miyano Bioinformatics 27 (5), 734-735, 2011 | 13 | 2011 |
| Targeted next generation sequencing revealed a novel homozygous loss-of-function mutation in ILDR1 gene causes autosomal recessive nonsyndromic sensorineural hearing loss in a … J An, J Yang, Y Wang, Y Wang, B Xu, G Xie, S Chai, X Liu, S Xu, X Wen, ... Frontiers in Genetics 10, 405807, 2019 | 10 | 2019 |
| On determining firing delay time of transitions for Petri net based signaling pathways by introducing stochastic decision rules Y Miwa, C Li, QW Ge, H Matsuno, S Miyano In Silico Biology 10 (1-2), 49-66, 2010 | 7 | 2010 |
