| Second-order methods for neural networks: Fast and reliable training methods for multi-layer perceptrons AJ Shepherd Springer Science & Business Media, 2012 | 317 | 2012 |
| The CATH database: an extended protein family resource for structural and functional genomics FMG Pearl, CF Bennett, JE Bray, AP Harrison, N Martin, A Shepherd, ... Nucleic acids research 31 (1), 452-455, 2003 | 317 | 2003 |
| Prediction of the location and type of β‐turns in proteins using neural networks AJ Shepherd, D Gorse, JM Thornton Protein science 8 (5), 1045-1055, 1999 | 157 | 1999 |
| Benchmarking natural-language parsers for biological applications using dependency graphs AB Clegg, AJ Shepherd BMC bioinformatics 8 (1), 1-17, 2007 | 118 | 2007 |
| VIDA: a virus database system for the organization of animal virus genome open reading frames MM Albą, D Lee, FMG Pearl, AJ Shepherd, N Martin, CA Orengo, ... Nucleic Acids Research 29 (1), 133-136, 2001 | 110 | 2001 |
| Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database DWA Buchan, AJ Shepherd, D Lee, FMG Pearl, SCG Rison, JM Thornton, ... Genome research 12 (3), 503-514, 2002 | 78 | 2002 |
| Toward predicting protein topology: An approach to identifying β hairpins X de la Cruz, EG Hutchinson, A Shepherd, JM Thornton Proceedings of the National Academy of Sciences 99 (17), 11157-11162, 2002 | 75 | 2002 |
| A realistic assessment of methods for extracting gene/protein interactions from free text R Kabiljo, AB Clegg, AJ Shepherd BMC bioinformatics 10 (1), 1-12, 2009 | 74 | 2009 |
| A rapid classification protocol for the CATH Domain Database to support structural genomics FMG Pearl, N Martin, JE Bray, DWA Buchan, AP Harrison, D Lee, ... Nucleic Acids Research 29 (1), 223-227, 2001 | 70 | 2001 |
| The CATH extended protein‐family database: Providing structural annotations for genome sequences FMG Pearl, D Lee, JE Bray, DWA Buchan, AJ Shepherd, CA Orengo Protein Science 11 (2), 233-244, 2002 | 60 | 2002 |
| The new ERA in supervised learning D Gorse, AJ Shepherd, JG Taylor Neural Networks 10 (2), 343-352, 1997 | 55 | 1997 |
| An analysis of B-cell epitope discontinuity GN Sivalingam, AJ Shepherd Molecular immunology 51 (3-4), 304-309, 2012 | 51 | 2012 |
| Evaluating and integrating treebank parsers on a biomedical corpus AB Clegg, AJ Shepherd Proceedings of Workshop on Software, 14-33, 2005 | 51 | 2005 |
| ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale M Halling-Brown, F Pappalardo, N Rapin, P Zhang, D Alemani, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2010 | 47 | 2010 |
| A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2 WD Lees, DS Moss, AJ Shepherd Bioinformatics 26 (11), 1403-1408, 2010 | 45 | 2010 |
| ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization F Pappalardo, MD Halling-Brown, N Rapin, P Zhang, D Alemani, ... Briefings in Bioinformatics 10 (3), 330-340, 2009 | 42 | 2009 |
| A text-mining system for extracting metabolic reactions from full-text articles J Czarnecki, I Nobeli, AM Smith, AJ Shepherd BMC bioinformatics 13 (1), 1-14, 2012 | 40 | 2012 |
| A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks AJ Shepherd, D Gorse, JM Thornton Proteins: Structure, Function, and Bioinformatics 50 (2), 290-302, 2003 | 34 | 2003 |
| A classical algorithm for avoiding local minima D Gorse, A Shepherd, JG Taylor Proceedings of the World Congress on Neural Networks, 364-369, 1994 | 21 | 1994 |
| A large‐scale computational study of inhibitor risk in non‐severe haemophilia A AJ Shepherd, S Skelton, CE Sansom, K Gomez, DS Moss, DP Hart British journal of haematology 168 (3), 413-420, 2015 | 17 | 2015 |
