Adrian J Shepherd
Adrian J Shepherd
Professor of Computational Biology, Birkbeck, University of London
Verified email at mail.cryst.bbk.ac.uk - Homepage
Title
Cited by
Cited by
Year
Second-order methods for neural networks: Fast and reliable training methods for multi-layer perceptrons
AJ Shepherd
Springer Science & Business Media, 2012
3172012
The CATH database: an extended protein family resource for structural and functional genomics
FMG Pearl, CF Bennett, JE Bray, AP Harrison, N Martin, A Shepherd, ...
Nucleic acids research 31 (1), 452-455, 2003
3172003
Prediction of the location and type of β‐turns in proteins using neural networks
AJ Shepherd, D Gorse, JM Thornton
Protein science 8 (5), 1045-1055, 1999
1571999
Benchmarking natural-language parsers for biological applications using dependency graphs
AB Clegg, AJ Shepherd
BMC bioinformatics 8 (1), 1-17, 2007
1182007
VIDA: a virus database system for the organization of animal virus genome open reading frames
MM Albą, D Lee, FMG Pearl, AJ Shepherd, N Martin, CA Orengo, ...
Nucleic Acids Research 29 (1), 133-136, 2001
1102001
Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database
DWA Buchan, AJ Shepherd, D Lee, FMG Pearl, SCG Rison, JM Thornton, ...
Genome research 12 (3), 503-514, 2002
782002
Toward predicting protein topology: An approach to identifying β hairpins
X de la Cruz, EG Hutchinson, A Shepherd, JM Thornton
Proceedings of the National Academy of Sciences 99 (17), 11157-11162, 2002
752002
A realistic assessment of methods for extracting gene/protein interactions from free text
R Kabiljo, AB Clegg, AJ Shepherd
BMC bioinformatics 10 (1), 1-12, 2009
742009
A rapid classification protocol for the CATH Domain Database to support structural genomics
FMG Pearl, N Martin, JE Bray, DWA Buchan, AP Harrison, D Lee, ...
Nucleic Acids Research 29 (1), 223-227, 2001
702001
The CATH extended protein‐family database: Providing structural annotations for genome sequences
FMG Pearl, D Lee, JE Bray, DWA Buchan, AJ Shepherd, CA Orengo
Protein Science 11 (2), 233-244, 2002
602002
The new ERA in supervised learning
D Gorse, AJ Shepherd, JG Taylor
Neural Networks 10 (2), 343-352, 1997
551997
An analysis of B-cell epitope discontinuity
GN Sivalingam, AJ Shepherd
Molecular immunology 51 (3-4), 304-309, 2012
512012
Evaluating and integrating treebank parsers on a biomedical corpus
AB Clegg, AJ Shepherd
Proceedings of Workshop on Software, 14-33, 2005
512005
ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale
M Halling-Brown, F Pappalardo, N Rapin, P Zhang, D Alemani, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2010
472010
A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2
WD Lees, DS Moss, AJ Shepherd
Bioinformatics 26 (11), 1403-1408, 2010
452010
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization
F Pappalardo, MD Halling-Brown, N Rapin, P Zhang, D Alemani, ...
Briefings in Bioinformatics 10 (3), 330-340, 2009
422009
A text-mining system for extracting metabolic reactions from full-text articles
J Czarnecki, I Nobeli, AM Smith, AJ Shepherd
BMC bioinformatics 13 (1), 1-14, 2012
402012
A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks
AJ Shepherd, D Gorse, JM Thornton
Proteins: Structure, Function, and Bioinformatics 50 (2), 290-302, 2003
342003
A classical algorithm for avoiding local minima
D Gorse, A Shepherd, JG Taylor
Proceedings of the World Congress on Neural Networks, 364-369, 1994
211994
A large‐scale computational study of inhibitor risk in non‐severe haemophilia A
AJ Shepherd, S Skelton, CE Sansom, K Gomez, DS Moss, DP Hart
British journal of haematology 168 (3), 413-420, 2015
172015
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