Denis Kutnjak
Denis Kutnjak
National Instiute of Biology
Verified email at nib.si
Title
Cited by
Cited by
Year
Next generation sequencing for detection and discovery of plant viruses and viroids: comparison of two approaches
A Pecman, D Kutnjak, I Gutiérrez-Aguirre, I Adams, A Fox, N Boonham, ...
Frontiers in microbiology 8, 1998, 2017
1012017
High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe
A Steyer, I Gutiérrez-Aguire, M Kolenc, S Koren, D Kutnjak, M Pokorn, ...
Journal of clinical microbiology 51 (11), 3818-3825, 2013
682013
Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population
D Kutnjak, M Rupar, I Gutierrez-Aguirre, T Curk, JF Kreuze, M Ravnikar
Journal of virology 89 (9), 4760-4769, 2015
592015
Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies
S Massart, M Chiumenti, K De Jonghe, R Glover, A Haegeman, I Koloniuk, ...
Phytopathology 109 (3), 488-497, 2019
582019
Escaping to the summits: phylogeography and predicted range dynamics of Cerastium dinaricum, an endangered high mountain plant endemic to the western Balkan Peninsula
D Kutnjak, M Kuttner, M Niketić, S Dullinger, P Schönswetter, B Frajman
Molecular Phylogenetics and Evolution 78, 365-374, 2014
472014
High‐throughput sequencing technologies for plant pest diagnosis: challenges and opportunities
A Olmos, N Boonham, T Candresse, P Gentit, B Giovani, D Kutnjak, ...
EPPO Bulletin 48 (2), 219-224, 2018
332018
Complete genome sequences of new divergent potato virus X isolates and discrimination between strains in a mixed infection using small RNAs sequencing approach
D Kutnjak, R Silvestre, W Cuellar, W Perez, G Müller, M Ravnikar, ...
Virus research 191, 45-50, 2014
302014
Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia
T Naglič, D Rihtarič, P Hostnik, N Toplak, S Koren, U Kuhar, ...
BMC veterinary research 14 (1), 1-10, 2018
162018
Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y
D Kutnjak, SF Elena, M Ravnikar
Journal of virology 91 (16), e00690-17, 2017
162017
Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment
K Bačnik, D Kutnjak, A Pecman, N Mehle, MT Žnidarič, IG Aguirre, ...
Water research 177, 115628, 2020
112020
New Insights into the evolutionary and genomic landscape of Molluscum Contagiosum Virus (MCV) based on nine MCV1 and six MCV2 complete genome sequences
TM Zorec, D Kutnjak, L Hošnjak, B Kušar, K Trčko, BJ Kocjan, Y Li, ...
Viruses 10 (11), 586, 2018
102018
Transmission modes affect the population structure of potato virus Y in potato
W da Silva, D Kutnjak, Y Xu, Y Xu, J Giovannoni, SF Elena, S Gray
PLoS pathogens 16 (6), e1008608, 2020
82020
Water-mediated transmission of plant, animal, and human viruses
N Mehle, I Gutierrez-Aguirre, D Kutnjak, M Ravnikar
Advances in virus research 101, 85-128, 2018
82018
Detection and diagnosis of PVY
L Glais, MC Ali, AV Karasev, D Kutnjak, C Lacomme
Potato virus Y: Biodiversity, pathogenicity, epidemiology and management …, 2017
82017
A primer on the analysis of high-throughput sequencing data for detection of plant viruses
D Kutnjak, L Tamisier, I Adams, N Boonham, T Candresse, M Chiumenti, ...
Microorganisms 9 (4), 841, 2021
42021
Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection
L Tamisier, A Haegeman, Y Foucart, N Fouillien, M Al Rwahnih, N Buzkan, ...
32021
Detection of four new tomato viruses in Serbia using post-hoc high-throughput sequencing analysis of samples from a large-scale field survey
A Vucurovic, D Kutnjak, N Mehle, I Stanković, A Pecman, A Bulajic, ...
Plant Disease, 2021
32021
First Report of Cucurbit Aphid-Borne Yellows Virus in Cucurbita pepo and Cucurbita maxima in Slovenia
N Mehle, D Kutnjak, N Jakoš, G Seljak, A Pecman, S Massart, M Ravnikar
Plant Disease 104 (2), 599-599, 2020
32020
High-throughput sequencing facilitates characterization of a “forgotten” plant virus: The case of a Henbane mosaic virus infecting tomato
A Pecman, D Kutnjak, N Mehle, MT Žnidarič, I Gutiérrez-Aguirre, P Pirnat, ...
Frontiers in microbiology 9, 2739, 2018
32018
First report of Apium virus Y and Carrot thin leaf virus in parsley in Slovenia
N Mehle, D Kutnjak, M Tušek Žnidarič, M Ravnikar
Plant Disease 103 (3), 592, 2019
22019
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