| Recent development and biomedical applications of probabilistic Boolean networks P Trairatphisan, A Mizera, J Pang, AA Tantar, J Schneider, T Sauter Cell communication and signaling 11, 1-25, 2013 | 104 | 2013 |
| From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL A Liu, P Trairatphisan, E Gjerga, A Didangelos, J Barratt, ... NPJ systems biology and applications 5 (1), 40, 2019 | 86 | 2019 |
| L‐plastin Ser5 phosphorylation in breast cancer cells and in vitro is mediated by RSK downstream of the ERK/MAPK pathway MJ Lommel, P Trairatphisan, K Gäbler, C Laurini, A Muller, T Kaoma, ... The FASEB Journal 30 (3), 1218-1233, 2016 | 39 | 2016 |
| Dysregulated mesenchymal PDGFR‐β drives kidney fibrosis EM Buhl, S Djudjaj, BM Klinkhammer, K Ermert, VG Puelles, ... EMBO Molecular Medicine 12 (3), e11021, 2020 | 37 | 2020 |
| optPBN: An optimisation toolbox for probabilistic Boolean networks P Trairatphisan, A Mizera, J Pang, AA Tantar, T Sauter PLoS One 9 (7), e98001, 2014 | 37 | 2014 |
| A Probabilistic Boolean network approach for the analysis of cancer-specific signalling: a case study of deregulated pdgf signalling in GIST P Trairatphisan, M Wiesinger, C Bahlawane, S Haan, T Sauter PloS one 11 (5), e0156223, 2016 | 17 | 2016 |
| Quantitative systems toxicology modeling to address key safety questions in drug development: a focus of the TransQST consortium S Ferreira, C Fisher, LI Furlong, L Laplanche, BK Park, C Pin, ... Chemical Research in Toxicology 33 (1), 7-9, 2020 | 15 | 2020 |
| Converting networks to predictive logic models from perturbation signalling data with CellNOpt E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ... Bioinformatics 36 (16), 4523-4524, 2020 | 14 | 2020 |
| FALCON: a toolbox for the fast contextualization of logical networks S De Landtsheer, P Trairatphisan, P Lucarelli, T Sauter Bioinformatics 33 (21), 3431-3436, 2017 | 13 | 2017 |
| Integration of temporal single cell cellular stress response activity with logic-ODE modeling reveals activation of ATF4-CHOP axis as a critical predictor of drug-induced liver … LS Wijaya, P Trairatphisan, A Gabor, M Niemeijer, J Keet, AA Morera, ... Biochemical Pharmacology 190, 114591, 2021 | 12 | 2021 |
| The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment G Callegaro, SJ Kunnen, P Trairatphisan, S Grosdidier, M Niemeijer, ... Archives of toxicology 95, 3745-3775, 2021 | 9 | 2021 |
| Probabilistic model checking of the PDGF signaling pathway Q Yuan, P Trairatphisan, J Pang, S Mauw, M Wiesinger, T Sauter Transactions on Computational Systems Biology XIV: Special Issue on …, 2012 | 6 | 2012 |
| From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL. NPJ Syst Biol Appl 5 A Liu, P Trairatphisan, E Gjerga | 5 | 2019 |
| Literature and data-driven based inference of signalling interactions using time-course data E Gjerga, P Trairatphisan, A Gabor, J Saez-Rodriguez IFAC-PapersOnLine 52 (26), 52-57, 2019 | 3 | 2019 |
| A study of the PDGF signaling pathway with PRISM Q Yuan, J Pang, S Mauw, P Trairatphisan, M Wiesinger, T Sauter arXiv preprint arXiv:1109.1367, 2011 | 3 | 2011 |
| The human hepatocyte TXG-MAPr: WGCNA transcriptomic modules to support mechanism-based risk assessment G Callegaro, SJ Kunnen, P Trairatphisan, S Grosdidier, M Niemeijer, ... BioRxiv, 2021.05. 17.444463, 2021 | 1 | 2021 |
| A balancing act: Parameter estimation for biological models with steady-state measurements A Mizera, J Pang, T Sauter, P Trairatphisan Proc. 11th Conference on Computational Methods in Systems Biology, ser. LNBI …, 2013 | 1 | 2013 |
| Identifying multiscale translational safety biomarkers using a network-based systems approach G Callegaro, JP Schimming, JP González, SJ Kunnen, L Wijaya, ... Iscience 26 (3), 2023 | | 2023 |
| Spatio-temporal transcriptomic analysis reveals distinct nephrotoxicity, DNA damage and regeneration response after cisplatin LS Wijaya, S Kunnen, P Trairatphisan, C Fisher, M Crosby, K Schaefer, ... bioRxiv, 2023.01. 03.522568, 2023 | | 2023 |
| S-25-02 Gene co-expression network analysis of toxicogenomic data linked to histopathology provides quantitative mode-of-action assessment and prediction of drug-induced organ … SJ Kunnen, G Callegaro, LS Wijaya, P Trairatphisan, J Mollon, ... Toxicology Letters 368, S60, 2022 | | 2022 |
Julio Saez RodriguezHeidelberg UniversityVerified email at bioquant.uni-heidelberg.de
