MacIntosh Cornwell
MacIntosh Cornwell
MD/PhD Candidate, NYU Grossman School of Medicine
Verified email at
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Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
Allele-specific chromatin recruitment and therapeutic vulnerabilities of ESR1 activating mutations
R Jeselsohn, JS Bergholz, M Pun, MI Cornwell, W Liu, A Nardone, T Xiao, ...
Cancer cell 33 (2), 173-186. e5, 2018
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ...
BMC bioinformatics 19 (1), 1-14, 2018
Embryonic transcription factor SOX9 drives breast cancer endocrine resistance
R Jeselsohn, MI Cornwell, M Pun, G Buchwalter, M Nguyen, C Bango, ...
Proceedings of the National Academy of Sciences 114 (22), E4482-E4491, 2017
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
Integrated proteogenomic characterization across major histological types of pediatric brain cancer
F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ...
Cell 183 (7), 1962-1985. e31, 2020
Impact of a pre-operative exercise intervention on breast cancer proliferation and gene expression: results from the pre-operative health and body (PreHAB) study
JA Ligibel, D Dillon, A Giobbie-Hurder, A McTiernan, E Frank, MI Cornwell, ...
Clinical Cancer Research 25 (17), 5398-5406, 2019
Unraveling the clinicopathological features driving the emergence of ESR1 mutations in metastatic breast cancer
Y Kuang, B Siddiqui, J Hu, M Pun, MI Cornwell, G Buchwalter, ...
npj Breast Cancer 4 (1), 22, 2018
NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains
P Lhoumaud, S Badri, J Rodriguez-Hernaez, T Sakellaropoulos, G Sethia, ...
Nature communications 10 (1), 1-18, 2019
EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
P Lhoumaud, G Sethia, F Izzo, T Sakellaropoulos, V Snetkova, S Vidal, ...
Genome biology 20 (1), 1-12, 2019
Clinical Proteomic Tumor Analysis C
Y Dou, EA Kawaler, D Cui Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Proteogenomic Characterization of Endometrial Carcinoma. Cell 180 (4), 729-748, 2020
BlackSheep: A Bioconductor and Bioconda package for differential extreme value analysis
L Blumenberg, EA Kawaler, MI Cornwell, S Smith, KV Ruggles, D Fenyö
Journal of Proteome Research 20 (7), 3767-3773, 2021
Platelets Contribute to Disease Severity in COVID‐19
TJ Barrett, S Bilaloglu, M Cornwell, HM Burgess, VW Virginio, K Drenkova, ...
Journal of Thrombosis and Haemostasis, 2021
Platelets amplify endotheliopathy in COVID-19
TJ Barrett, MI Cornwell, K Myndzar, CC Rolling, Y Xia, K Drenkova, ...
Science advances 7 (37), eabh2434, 2021
Gene expression signature in patients with symptomatic peripheral artery disease
JD Newman, MIG Cornwell, H Zhou, C Rockman, A Heguy, Y Suarez, ...
Arteriosclerosis, Thrombosis, and Vascular Biology 41 (4), 1521-1533, 2021
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
Treatment of Early Stage Tonsil Cancer in the Age of Human Papillomavirus–Associated Malignancies
EJ Patel, AW Zhu, JR Oliver, MI Cornwell, AS Jacobson, KS Hu, M Tam, ...
Otolaryngology–Head and Neck Surgery 165 (1), 104-112, 2021
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