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Carl G de Boer
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Defining T cell states associated with response to checkpoint immunotherapy in melanoma
M Sade-Feldman, K Yizhak, SL Bjorgaard, JP Ray, CG de Boer, ...
Cell 175 (4), 998-1013. e20, 2018
15802018
Deciphering eukaryotic gene-regulatory logic with 100 million random promoters
CG de Boer, ED Vaishnav, R Sadeh, EL Abeyta, N Friedman, A Regev
Nature biotechnology 38 (1), 56-65, 2020
2552020
Core circadian clock genes regulate leukemia stem cells in AML
RV Puram, MS Kowalczyk, CG de Boer, RK Schneider, PG Miller, ...
Cell 165 (2), 303-316, 2016
2462016
Defining T cell states associated with response to checkpoint immunotherapy in melanoma
M Sade-Feldman, K Yizhak, SL Bjorgaard, JP Ray, CG de Boer, ...
Cell 176 (1), 404, 2019
2282019
YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities
CG De Boer, TR Hughes
Nucleic acids research 40 (D1), D169-D179, 2012
2232012
The evolution, evolvability and engineering of gene regulatory DNA
ED Vaishnav, CG de Boer, J Molinet, M Yassour, L Fan, X Adiconis, ...
Nature 603 (7901), 455-463, 2022
1852022
Heterogeneous responses of hematopoietic stem cells to inflammatory stimuli are altered with age
M Mann, A Mehta, CG de Boer, MS Kowalczyk, K Lee, P Haldeman, ...
Cell reports 25 (11), 2992-3005. e5, 2018
1672018
Mapping yeast transcriptional networks
TR Hughes, CG de Boer
Genetics 195 (1), 9-36, 2013
972013
Global discovery of lupus genetic risk variant allelic enhancer activity
X Lu, X Chen, C Forney, O Donmez, D Miller, S Parameswaran, T Hong, ...
Nature communications 12 (1), 1611, 2021
552021
Natural variation in non-coding regions underlying phenotypic diversity in budding yeast
F Salinas, CG De Boer, V Abarca, V García, M Cuevas, S Araos, ...
Scientific reports 6 (1), 21849, 2016
552016
BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization
CG de Boer, A Regev
BMC bioinformatics 19, 1-13, 2018
522018
Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features
JP Ray, CG de Boer, CP Fulco, CA Lareau, M Kanai, JC Ulirsch, ...
Nature communications 11 (1), 1237, 2020
492020
Prioritization of autoimmune disease-associated genetic variants that perturb regulatory element activity in T cells
K Mouri, MH Guo, CG de Boer, MM Lissner, IA Harten, GA Newby, ...
Nature genetics 54 (5), 603-612, 2022
432022
Hold out the genome: a roadmap to solving the cis-regulatory code
CG de Boer, J Taipale
Nature 625 (7993), 41-50, 2024
392024
MAUDE: inferring expression changes in sorting-based CRISPR screens
CG de Boer, JP Ray, N Hacohen, A Regev
Genome Biology 21 (1), 134, 2020
362020
A unified model for yeast transcript definition
CG de Boer, H van Bakel, K Tsui, J Li, QD Morris, C Nislow, JF Greenblatt, ...
Genome research 24 (1), 154-166, 2014
282014
Poly-dA: dT tracts form an in vivo nucleosomal turnstile
CG de Boer, TR Hughes
PloS one 9 (10), e110479, 2014
242014
LegNet: a best-in-class deep learning model for short DNA regulatory regions
D Penzar, D Nogina, E Noskova, A Zinkevich, G Meshcheryakov, A Lando, ...
Bioinformatics 39 (8), btad457, 2023
172023
Systematic identification of genomic elements that regulate FCGR2A expression and harbor variants linked with autoimmune disease
J Dahlqvist, CP Fulco, JP Ray, T Liechti, CG de Boer, DJ Lieb, ...
Human molecular genetics 31 (12), 1946-1961, 2022
112022
Regulatory activity is the default DNA state in eukaryotes
I Luthra, C Jensen, XE Chen, AL Salaudeen, AM Rafi, CG de Boer
Nature Structural & Molecular Biology 31 (3), 559-567, 2024
72024
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Artikler 1–20