Christiaan Henkel

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Herman SpainkLeiden UniversityVerified email at biology.leidenuniv.nl
Ron DirksManaging Director, Future Genomics Technologies, LeidenVerified email at futuregenomics.tech
Finn-Arne WeltzienProfessor, Norwegian University of Life Sciences, Faculty of Veterinary MedicineVerified email at nmbu.no
Walter PirovanoResearch project manager, VU UniversityVerified email at vu.nl
Grzegorz RozenbergProfessor of Computer Science, Leiden UniversityVerified email at liacs.leidenuniv.nl
Erik BurgerhoutResearcher at Nofima ASVerified email at nofima.no
Romain FONTAINEResearcher, Norwegian University of Life SciencesVerified email at nmbu.no
Eirill ager-wickResearcher, Norwegian University of Life SciencesVerified email at nmbu.no
Paul HooykaasHoogleraar GeneticaVerified email at biology.leidenuniv.nl
Manfred SchartlPhysiological Chemistry, University of Würzburg, Biozentrum, Am Hubland, 97070 Würzburg, Germany and Comprehensive Cancer Center, University Clinic Würzburg, Josef Schneider Straße 6, 97080 Würzburg, Germany and Texas Institute for Advanced Study and Department of Biology, Texas A&M University, College Station, USAVerified email at biozentrum.uni-wuerzburg.de
Magnus PalmbladLeiden University Medical CenterVerified email at lumc.nl
Joost KokDean of the Faculty of Electrical Engineering, Mathematics and Computer Science at the University ofVerified email at utwente.nl
Fons J. VerbeekProfessor of Computer Science, Leiden UniversityVerified email at liacs.leidenuniv.nl
Thomas BäckProfessor of Computer Science, Leiden University; Chief Scientist, NORCE Research Centre, NorwayVerified email at liacs.leidenuniv.nl
Elia StupkaBoehringer Ingelheim PharmaVerified email at boehringer-ingelheim.com
Todd CastoeProfessor, Department of Biology, University of Texas at ArlingtonVerified email at uta.edu
Guido van den ThillartLeiden University

Christiaan Henkel

Norwegian University of Life Sciences

Verified email at nmbu.no - Homepage

Genomics


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Scaffolding pre-assembled contigs using SSPACE M Boetzer, CV Henkel, HJ Jansen, D Butler, W Pirovano Bioinformatics 27 (4), 578-579, 2010	2496	2010
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013	489	2013
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes TA Castoe, APJ De Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013	311	2013
Primitive duplicate Hox clusters in the European eel's genome CV Henkel, E Burgerhout, DL de Wijze, RP Dirks, Y Minegishi, HJ Jansen, ... PloS one 7 (2), e32231, 2012	160	2012
Rapid de novo assembly of the European eel genome from nanopore sequencing reads HJ Jansen, M Liem, SA Jong-Raadsen, S Dufour, FA Weltzien, ... Scientific Reports 7 (1), 7213, 2017	122	2017
First draft genome sequence of the Japanese eel, Anguilla japonica CV Henkel, RP Dirks, DL de Wijze, Y Minegishi, J Aoyama, HJ Jansen, ... Gene 511 (2), 195-201, 2012	118	2012
Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection A Ordas, Z Hegedus, CV Henkel, OW Stockhammer, D Butler, HJ Jansen, ... Fish & shellfish immunology 31 (5), 716-724, 2011	96	2011
Comparison of the Exomes of Common Carp (Cyprinus carpio) and Zebrafish (Danio rerio) CV Henkel, RP Dirks, HJ Jansen, M Forlenza, GF Wiegertjes, K Howe, ... Zebrafish 9 (2), 59-67, 2012	88	2012
Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish AP Palstra, S Beltran, E Burgerhout, SA Brittijn, LJ Magnoni, CV Henkel, ... PloS one 8 (1), e53171, 2013	76	2013
DNA computing using single-molecule hybridization detection KA Schmidt, CV Henkel, G Rozenberg, HP Spaink Nucleic acids research 32 (17), 4962-4968, 2004	48	2004
DNA computing of solutions to knapsack problems CV Henkel, T Bäck, JN Kok, G Rozenberg, HP Spaink Biosystems 88 (1-2), 156-162, 2007	45	2007
Conserved expression signatures between medaka and human pigment cell tumors M Schartl, S Kneitz, B Wilde, T Wagner, CV Henkel, HP Spaink, ... PloS one 7 (5), e37880, 2012	42	2012
A full-body transcriptome and proteome resource for the European common carp I Kolder, SJ Van der Plas-Duivesteijn, G Tan, GF Wiegertjes, M Forlenza, ... BMC genomics 17 (1), 701, 2016	41	2016
Snake genome sequencing: results and future prospects HMI Kerkkamp, RM Kini, AS Pospelov, FJ Vonk, CV Henkel, ... Toxins 8 (12), 360, 2016	37	2016
Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the Notch pathway E Alghisi, M Distel, M Malagola, V Anelli, C Santoriello, L Herwig, ... Leukemia 27 (11), 2229-2241, 2013	34	2013
Identification of common carp innate immune genes with whole-genome sequencing and RNA-Seq data Y Zhang, E Stupka, CV Henkel, HJ Jansen, HP Spaink, FJ Verbeek Journal of integrative bioinformatics 8 (2), 165-175, 2011	34	2011
Swimming exercise enhances brain plasticity in fish D Mes, AP Palstra, CV Henkel, I Mayer, MA Vindas Royal Society Open Science 7 (1), 191640, 2020	27	2020
The Agrobacterium tumefaciens virulence protein VirE3 is a transcriptional activator of the F‐box gene VBF X Niu, M Zhou, CV Henkel, GPH van Heusden, PJJ Hooykaas The Plant Journal 84 (5), 914-924, 2015	27	2015
Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla); Biomarkers for broodstock selection E Burgerhout, Y Minegishi, SA Brittijn, DL de Wijze, CV Henkel, ... General and comparative endocrinology 225, 185-196, 2016	24	2016
Genome sequence of the octopine-type Agrobacterium tumefaciens strain Ach5 CV Henkel, A den Dulk-Ras, X Zhang, PJJ Hooykaas Genome Announc. 2 (2), e00225-14, 2014	24	2014

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