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Goksel Misirli
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Anomaly detection for IoT time-series data: A survey
AA Cook, G Mısırlı, Z Fan
IEEE Internet of Things Journal 7 (7), 6481-6494, 2019
5802019
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545-550, 2014
3182014
Synthetic biology open language (SBOL) version 2.3
C Madsen, A Goñi Moreno, U P, Z Palchick, N Roehner, C Atallah, ...
Journal of integrative bioinformatics 16 (2), 20190025, 2019
164*2019
SynBioHub: a standards-enabled design repository for synthetic biology
JA McLaughlin, CJ Myers, Z Zundel, G Mısırlı, M Zhang, ID Ofiteru, ...
ACS synthetic biology 7 (2), 682-688, 2018
1412018
Standard virtual biological parts: a repository of modular modeling components for synthetic biology
MT Cooling, V Rouilly, G Misirli, J Lawson, T Yu, J Hallinan, A Wipat
Bioinformatics 26 (7), 925-931, 2010
1082010
Sharing structure and function in biological design with SBOL 2.0
N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ...
ACS synthetic biology 5 (6), 498-506, 2016
962016
Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins
S Pohl, G Bhavsar, J Hulme, AE Bloor, G Misirli, MW Leckenby, ...
Proteomics 13 (22), 3298-3308, 2013
692013
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
682019
The synthetic biology open language (SBOL) version 3: simplified data exchange for bioengineering
JA McLaughlin, J Beal, G Mısırlı, R Grünberg, BA Bartley, J Scott-Brown, ...
Frontiers in Bioengineering and Biotechnology 8, 1009, 2020
502020
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
442017
Model annotation for synthetic biology: automating model to nucleotide sequence conversion
G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ...
Bioinformatics 27 (7), 973-979, 2011
412011
A computational workflow for the automated generation of models of genetic designs
G Misirli, T Nguyen, JA McLaughlin, P Vaidyanathan, TS Jones, ...
ACS synthetic biology 8 (7), 1548-1559, 2018
372018
Synthetic biology open language (SBOL) version 1.1. 0
M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...
372012
Data integration and mining for synthetic biology design
G Mısırlı, J Hallinan, M Pocock, P Lord, JA McLaughlin, H Sauro, A Wipat
ACS synthetic biology 5 (10), 1086-1097, 2016
36*2016
libSBOLj 2.0: a java library to support SBOL 2.0
Z Zhang, T Nguyen, N Roehner, G Misirli, M Pocock, E Oberortner, ...
IEEE life sciences letters 1 (4), 34-37, 2015
34*2015
Proposed data model for the next version of the Synthetic Biology Open Language
N Roehner, E Oberortner, M Pocock, J Beal, K Clancy, C Madsen, ...
ACS synthetic biology 4 (1), 57-71, 2015
34*2015
Synthetic biology open language (SBOL) version 3.1. 0
L Buecherl, T Mitchell, J Scott-Brown, P Vaidyanathan, G Vidal, H Baig, ...
Journal of Integrative Bioinformatics 20 (1), 20220058, 2023
33*2023
The SBOL stack: a platform for storing, publishing, and sharing synthetic biology designs
C Madsen, JA McLaughlin, G Mısırlı, M Pocock, K Flanagan, J Hallinan, ...
ACS synthetic biology 5 (6), 487-497, 2016
332016
Composable modular models for synthetic biology
G Misirli, J Hallinan, A Wipat
ACM Journal on Emerging Technologies in Computing Systems (JETC) 11 (3), 1-19, 2014
292014
VisBOL: web-based tools for synthetic biology design visualization
JA McLaughlin, M Pocock, G Mısırlı, C Madsen, A Wipat
ACS synthetic biology 5 (8), 874-876, 2016
222016
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