| Emergence of genomic diversity and recurrent mutations in SARS-CoV-2 L van Dorp, M Acman, D Richard, LP Shaw, CE Ford, L Ormond, CJ Owen, ... Infection, Genetics and Evolution 83, 104351, 2020 | 928 | 2020 |
| The global distribution and spread of the mobilized colistin resistance gene mcr-1 R Wang, L van Dorp, LP Shaw, P Bradley, Q Wang, X Wang, L Jin, ... Nature communications 9 (1), 1-9, 2018 | 597 | 2018 |
| Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 14061, 2017 | 557 | 2017 |
| No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2 L van Dorp, D Richard, CCS Tan, LP Shaw, M Acman, F Balloux Nature communications 11 (1), 5986, 2020 | 384 | 2020 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 248 | 2019 |
| From theory to practice: translating whole-genome sequencing (WGS) into the clinic F Balloux, OB Brynildsrud, L van Dorp, LP Shaw, H Chen, KA Harris, ... Trends in microbiology 26 (12), 1035-1048, 2018 | 185 | 2018 |
| Modelling microbiome recovery after antibiotics using a stability landscape framework LP Shaw, H Bassam, CP Barnes, AS Walker, N Klein, F Balloux The ISME Journal, 2019 | 126 | 2019 |
| Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet F Lassalle, M Spagnoletti, M Fumagalli, L Shaw, M Dyble, C Walker, ... Molecular ecology 27 (1), 182-195, 2018 | 118 | 2018 |
| Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ... GigaScience 9 (2), giaa007, 2020 | 114 | 2020 |
| The Human Salivary Microbiome Is Shaped by Shared Environment Rather than Genetics: Evidence from a Large Family of Closely Related Individuals L Shaw, ALR Ribeiro, AP Levine, N Pontikos, F Balloux, AW Segal, ... MBio 8 (5), e01237-17, 2017 | 108 | 2017 |
| Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM M Acman, R Wang, L van Dorp, LP Shaw, Q Wang, N Luhmann, Y Yin, ... Nature Communications 13 (1), 1131, 2022 | 107 | 2022 |
| Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, ... Microbial genomics 6 (2), e000335, 2020 | 102 | 2020 |
| The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ... Environmental Microbiome 14 (1), 1-15, 2019 | 92 | 2019 |
| The phylogenetic range of bacterial and viral pathogens of vertebrates LP Shaw, AD Wang, D Dylus, M Meier, G Pogacnik, C Dessimoz, ... Molecular ecology 29 (17), 3361-3379, 2020 | 87 | 2020 |
| Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture C Nimmo, LP Shaw, R Doyle, R Williams, K Brien, C Burgess, J Breuer, ... BMC genomics 20, 1-9, 2019 | 82 | 2019 |
| DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization. JS Schreck, TE Ouldridge, F Romano, P Šulc, LP Shaw, AA Louis, ... Nucleic acids research, 2015 | 70 | 2015 |
| Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: A Cross-Sectional Cohort Study in Malawi L Shaw, U Harjunmaa, R Doyle, S Mulewa, D Charlie, K Maleta, R Callard, ... Applied and Environmental Microbiology 82 (18), 2016 | 62 | 2016 |
| Niche and local geography shape the pangenome of wastewater-and livestock-associated Enterobacteriaceae LP Shaw, KK Chau, J Kavanagh, M AbuOun, E Stubberfield, HS Gweon, ... Science Advances 7 (15), eabe3868, 2021 | 55 | 2021 |
| STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies T Bharucha, C Oeser, F Balloux, JR Brown, EC Carbo, A Charlett, ... The Lancet Infectious Diseases 20 (10), e251-e260, 2020 | 50 | 2020 |
| Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles. LP Shaw, RM Doyle, E Kavaliunaite, H Spencer, F Balloux, G Dixon, ... Clinical infectious diseases, 2019 | 46 | 2019 |
