Ilka Hoof
Ilka Hoof
Research Scientist, Denmark
No verified email
Title
Cited by
Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
17012014
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
11272014
The immune epitope database 2.0
R Vita, L Zarebski, JA Greenbaum, H Emami, I Hoof, N Salimi, R Damle, ...
Nucleic acids research 38 (suppl_1), D854-D862, 2010
6642010
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61 (1), 1-13, 2009
5872009
Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution
C Rausch, I Hoof, T Weber, W Wohlleben, DH Huson
BMC evolutionary biology 7 (1), 1-15, 2007
2732007
Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
E Ntini, AI Järvelin, J Bornholdt, Y Chen, M Boyd, M Jørgensen, ...
Nature structural & molecular biology 20 (8), 923, 2013
2322013
CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters
T Weber, C Rausch, P Lopez, I Hoof, V Gaykova, DH Huson, ...
Journal of biotechnology 140 (1-2), 13-17, 2009
1322009
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
972014
Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation
M Rönnerblad, R Andersson, T Olofsson, I Douagi, M Karimi, S Lehmann, ...
Blood, The Journal of the American Society of Hematology 123 (17), e79-e89, 2014
742014
State of the art and challenges in sequence based T-cell epitope prediction
C Lundegaard, I Hoof, O Lund, M Nielsen
Immunome Research 6 (2), 1-14, 2010
692010
MHC motif viewer
N Rapin, I Hoof, O Lund, M Nielsen
Immunogenetics 60 (12), 759-765, 2008
532008
Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity
I Hoof, CL Pérez, M Buggert, RKL Gustafsson, M Nielsen, O Lund, ...
The Journal of Immunology 184 (9), 5383-5391, 2010
472010
CD8+ TCR repertoire formation is guided primarily by the peptide component of the antigenic complex
D Koning, AI Costa, I Hoof, JJ Miles, NM Nanlohy, K Ladell, KK Matthews, ...
The Journal of Immunology 190 (3), 931-939, 2013
422013
Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL
MV Larsen, A Lelic, R Parsons, M Nielsen, I Hoof, K Lamberth, MB Loeb, ...
PloS one 5 (9), e12697, 2010
422010
Comprehensive analysis of the naturally processed peptide repertoire: differences between HLA-A and B in the immunopeptidome
IMM Schellens, I Hoof, HD Meiring, SNM Spijkers, MCM Poelen, ...
PloS one 10 (9), e0136417, 2015
392015
HLA class I allele promiscuity revisited
X Rao, I Hoof, AICAF Costa, D van Baarle, C Keşmir
Immunogenetics 63 (11), 691-701, 2011
382011
The MHC motif viewer: a visualization tool for MHC binding motifs
N Rapin, I Hoof, O Lund, M Nielsen
Current protocols in immunology 88 (1), 18.17. 1-18.17. 13, 2010
352010
Proteome sampling by the HLA class I antigen processing pathway
I Hoof, D van Baarle, WH Hildebrand, C Keşmir
PLoS Comput Biol 8 (5), e1002517, 2012
332012
The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype
C Solomon, S Southwood, I Hoof, R Rudersdorf, B Peters, J Sidney, ...
Immunogenetics 62 (7), 451-464, 2010
282010
Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1* 02601 and Mamu-B* 08301 reveals HLA-A2 and HLA-A3 supertypic specificities
S Southwood, C Solomon, I Hoof, R Rudersdorf, J Sidney, B Peters, ...
Immunogenetics 63 (5), 275-290, 2011
212011
The system can't perform the operation now. Try again later.
Articles 1–20