Xavier Didelot

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Daniel FalushInstitute Pasteur ShanghaiVerified email at ips.ac.cn
Daniel J WilsonUniversity of OxfordVerified email at bdi.ox.ac.uk
Sarah WalkerProfessor of Medical Statistics and Epidemiology, Oxford University and University College LondonVerified email at ndm.ox.ac.uk
David EyreProfessor of Infectious Diseases, University of OxfordVerified email at bdi.ox.ac.uk
Rory BowdenWalter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Tanya GolubchikSydney Institute for Infectious Diseases, School of Medical Sciences, University of SydneyVerified email at sydney.edu.au
Mark Achtman FRSemeritus Professor University of Warwick, previously University College Cork and Max-PlanckVerified email at warwick.ac.uk
Martin C. J. MaidenProfessor of Molecular Epidemiology, University of OxfordVerified email at zoo.ox.ac.uk
Keith JolleyUniversity of OxfordVerified email at biology.ox.ac.uk
Nicole StoesserVerified email at ndm.ox.ac.uk
Francois BallouxUCL Genetics Institute; University College LondonVerified email at ucl.ac.uk
Sandeep J. Joseph PhD MPHDivision of STD Prevention, CDCVerified email at cdc.gov
Samuel K. SheppardDepartment of Biology, Oxford University, UKVerified email at biology.ox.ac.uk
Lilith K WhittlesSir Henry Wellcome Postdoctoral Fellow, Imperial College LondonVerified email at imperial.ac.uk
Caroline ColijnSimon Fraser University, Department of MathematicsVerified email at sfu.ca
Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
Sylvain BrisseInstitut Pasteur, Biodiversity and Epidemiology of Bacterial PathogensVerified email at pasteur.fr
Timothy D ReadEmory UniversityVerified email at emory.edu
Deborah DeanProfessor, UCSF; Faculty, UCSF-UCBerkeley Graduate Program in Bioengineering; Director, Children'sVerified email at chori.org
Richard G. EverittUniversity of WarwickVerified email at warwick.ac.uk

Xavier Didelot

University of Warwick

Verified email at warwick.ac.uk - Homepage

Evolution Microbiology Genomics


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Transforming clinical microbiology with bacterial genome sequencing X Didelot, R Bowden, DJ Wilson, TEA Peto, DW Crook Nature Reviews Genetics 13 (9), 601-612, 2012	789	2012
Inference of bacterial microevolution using multilocus sequence data X Didelot, D Falush Genetics 175 (3), 1251-1266, 2007	753	2007
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica M Achtman, J Wain, FX Weill, S Nair, Z Zhou, V Sangal, MG Krauland, ... PLoS Pathogens 8 (6), e1002776, 2012	694	2012
Diverse sources of C. difficile infection identified on whole-genome sequencing DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ... N Engl J Med 369, 1195-1205, 2013	683	2013
ClonalFrameML: efficient inference of recombination in whole bacterial genomes X Didelot, DJ Wilson PLoS computational biology 11 (2), e1004041, 2015	680	2015
A comparison of homologous recombination rates in bacteria and archaea M Vos, X Didelot The ISME journal 3 (2), 199-208, 2008	548	2008
The global distribution and spread of the mobilized colistin resistance gene mcr-1 R Wang, L Van Dorp, LP Shaw, P Bradley, Q Wang, X Wang, L Jin, ... Nature communications 9 (1), 1179, 2018	501	2018
Within-host evolution of bacterial pathogens X Didelot, AS Walker, TE Peto, DW Crook, DJ Wilson Nature Reviews Microbiology 14 (3), 150-162, 2016	395	2016
Impact of recombination on bacterial evolution X Didelot, MCJ Maiden Trends in microbiology 18 (7), 315-322, 2010	376	2010
Effects of control interventions on Clostridium difficile infection in England: an observational study KE Dingle, X Didelot, TP Quan, DW Eyre, N Stoesser, T Golubchik, ... The Lancet Infectious Diseases 17 (4), 411-421, 2017	308*	2017
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter SK Sheppard, X Didelot, G Meric, A Torralbo, KA Jolley, DJ Kelly, ... Proceedings of the national academy of sciences 110 (29), 11923-11927, 2013	297	2013
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ... Proceedings of the National Academy of Sciences, 2012	292	2012
Helicobacter pylori genome evolution during human infection L Kennemann, X Didelot, T Aebischer, S Kuhn, B Drescher, M Droege, ... Proceedings of the National Academy of Sciences 108 (12), 5033, 2011	284	2011
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ... BMJ open 2 (3), e001124, 2012	280	2012
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), e02162-15, 2016	276*	2016
Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data T Jombart, A Cori, X Didelot, S Cauchemez, C Fraser, N Ferguson PLoS computational biology 10 (1), e1003457, 2014	255	2014
Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring J Zhang, F Zhang, X Didelot, KD Bruce, FR Cagampang, M Vatish, ... BMC genomics 10 (1), 1-12, 2009	246	2009
Measurably evolving pathogens in the genomic era R Biek, OG Pybus, JO Lloyd-Smith, X Didelot Trends in ecology & evolution 30 (6), 306-313, 2015	235	2015
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ... Genome biology 13, 1-13, 2012	223	2012
Bayesian inference of infectious disease transmission from whole-genome sequence data X Didelot, J Gardy, C Colijn Molecular biology and evolution 31 (7), 1869-1879, 2014	220	2014

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