Juan Fernandez-Recio

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Iain MoalGlaxoSmithKlineVerifisert e-postadresse på gsk.com
Carles PonsInstitute for Research in BiomedicineVerifisert e-postadresse på irbbarcelona.org
Luca FedericiCe.S.I. University of ChietiVerifisert e-postadresse på unich.it
Chiara PallaraBarcelona Supercomputing CenterVerifisert e-postadresse på bsc.es
Tom L BlundellEmeritus Professor of Biochemistry, University of CambridgeVerifisert e-postadresse på cam.ac.uk
Javier sanchoprofessor of biochemistry, universidad de zaragozaVerifisert e-postadresse på unizar.es
Paul A BatesThe Francis Crick InstituteVerifisert e-postadresse på crick.ac.uk
Modesto OrozcoProfessor of Biochemistry, Universtity of Barcelona and Group Leader IRB BarcelonaVerifisert e-postadresse på irbbarcelona.org
Fabian GlaserTechnion, Israel Institute of TechnologyVerifisert e-postadresse på technion.ac.il
Bruno VilloutreixInsermVerifisert e-postadresse på inserm.fr
Vassiliy BavroProfessor of Structural Microbiology and Membrane Protein Science, University of EssexVerifisert e-postadresse på essex.ac.uk
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerifisert e-postadresse på umassmed.edu
Tammy ChengThe Francis Crick InstituteVerifisert e-postadresse på crick.ac.uk
Nicholas FurnhamLondon School of Hygiene and Tropical MedicineVerifisert e-postadresse på cryst.bioc.cam.ac.uk
Manuel RuedaCentro Nacional de Análisis Genómico, CNAGVerifisert e-postadresse på cnag.eu
Luca PellegriniDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UKVerifisert e-postadresse på cam.ac.uk
Nicholas HarmerUniversity of ExeterVerifisert e-postadresse på exeter.ac.uk
Jose Ignacio GarzonDepartment of Systems Biology, Columbia UniversityVerifisert e-postadresse på columbia.edu
Pablo ChacónHead of Structural Bioinformatics Group at the Instituto de Química Física Blas Cabrera (CSIC)Verifisert e-postadresse på chaconlab.org
Julio KovacsGatanVerifisert e-postadresse på gatan.com

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Juan Fernandez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV), CSIC / Uni. Rioja / Gob. Rioja

Verifisert e-postadresse på icvv.es - Startside

Structural Bioinformatics Protein Interactions Docking


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Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015	461	2015
pyDock: Electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking TMK Cheng, TL Blundell, J Fernandez‐Recio Proteins: Structure, Function, and Bioinformatics 68 (2), 503-515, 2007	385	2007
Identification of protein–protein interaction sites from docking energy landscapes J Fernandez-Recio, M Totrov, R Abagyan Journal of molecular biology 335 (3), 843-865, 2004	328	2004
SwarmDock: a server for flexible protein–protein docking M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates Bioinformatics 29 (6), 807-809, 2013	317	2013
pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring B Jiménez-García, C Pons, J Fernández-Recio Bioinformatics 29 (13), 1698-1699, 2013	290	2013
SKEMPI: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models IH Moal, J Fernández-Recio Bioinformatics 28 (20), 2600-2607, 2012	288	2012
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2019	282	2019
ICM‐DISCO docking by global energy optimization with fully flexible side‐chains J Fernández‐Recio, M Totrov, R Abagyan Proteins: Structure, Function, and Bioinformatics 52 (1), 113-117, 2003	270	2003
Soft protein–protein docking in internal coordinates J Fernández‐Recio, M Totrov, R Abagyan Protein Science 11 (2), 280-291, 2002	250	2002
Optimal docking area: a new method for predicting protein–protein interaction sites J Fernandez‐Recio, M Totrov, C Skorodumov, R Abagyan PROTEINS: Structure, Function, and bioinformatics 58 (1), 134-143, 2005	238	2005
Assembly and channel opening in a bacterial drug efflux machine VN Bavro, Z Pietras, N Furnham, L Pérez-Cano, J Fernández-Recio, ... Molecular cell 30 (1), 114-121, 2008	206	2008
Polygalacturonase inhibiting proteins: players in plant innate immunity? L Federici, A Di Matteo, J Fernandez-Recio, D Tsernoglou, F Cervone Trends in plant science 11 (2), 65-70, 2006	206	2006
The Crystal Structure of Fibroblast Growth Factor (FGF) 19 Reveals Novel Features of the FGF Family and Offers a Structural Basis for Its Unusual Receptor Affinity^, NJ Harmer, L Pellegrini, D Chirgadze, J Fernandez-Recio, TL Blundell Biochemistry 43 (3), 629-640, 2004	181	2004
FRODOCK: a new approach for fast rotational protein–protein docking JI Garzon, JR Lopéz-Blanco, C Pons, J Kovacs, R Abagyan, ... Bioinformatics 25 (19), 2544-2551, 2009	180	2009
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016	168	2016
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011	158	2011
Identification of hot-spot residues in protein-protein interactions by computational docking S Grosdidier, J Fernández-Recio BMC bioinformatics 9, 1-13, 2008	140	2008
The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution L Federici, D Du, F Walas, H Matsumura, J Fernandez-Recio, ... Journal of Biological Chemistry 280 (15), 15307-15314, 2005	140	2005
The structure of human 4F2hc ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane J Fort, LR de la Ballina, HE Burghardt, C Ferrer-Costa, J Turnay, ... Journal of Biological Chemistry 282 (43), 31444-31452, 2007	128	2007
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019	125	2019

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