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| Immuno-genomic landscape of osteosarcoma CC Wu, HC Beird, J Andrew Livingston, S Advani, A Mitra, S Cao, ... Nature communications 11 (1), 1008, 2020 | 141 | 2020 |
| Transcriptome deconvolution of heterogeneous tumor samples with immune infiltration Z Wang, S Cao, JS Morris, J Ahn, R Liu, S Tyekucheva, F Gao, B Li, W Lu, ... IScience 9, 451-460, 2018 | 64 | 2018 |
| Adaptive sparse multiple canonical correlation analysis with application to imaging (epi) genomics study of schizophrenia W Hu, D Lin, S Cao, J Liu, J Chen, VD Calhoun, YP Wang IEEE Transactions on Biomedical Engineering 65 (2), 390-399, 2017 | 55 | 2017 |
| Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse S Taavitsainen, N Engedal, S Cao, F Handle, A Erickson, S Prekovic, ... Nature communications 12 (1), 5307, 2021 | 49 | 2021 |
| Identifying stages of kidney renal cell carcinoma by combining gene expression and DNA methylation data SP Deng, S Cao, DS Huang, YP Wang IEEE/ACM transactions on computational biology and bioinformatics 14 (5 …, 2016 | 38 | 2016 |
| Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... Nature communications 11 (1), 731, 2020 | 34 | 2020 |
| Inferring structural variant cancer cell fraction M Cmero, K Yuan, CS Ong, J Schröder, NM Corcoran, T Papenfuss, ... Nature communications 11 (1), 730, 2020 | 31 | 2020 |
| Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression S Cao, JR Wang, S Ji, P Yang, Y Dai, S Guo, MD Montierth, JP Shen, ... Nature biotechnology 40 (11), 1624-1633, 2022 | 24 | 2022 |
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| A Systems Genetics Approach Identified GPD1L and its Molecular Mechanism for Obesity in Human Adipose Tissue H He, D Sun, Y Zeng, R Wang, W Zhu, S Cao, GA Bray, W Chen, H Shen, ... Scientific reports 7 (1), 1799, 2017 | 20 | 2017 |
| A statistical test for differential network analysis based on inference of Gaussian graphical model H He, S Cao, J Zhang, H Shen, YP Wang, H Deng Scientific reports 9 (1), 10863, 2019 | 17 | 2019 |
| Network-based meta-analyses of associations of multiple gene expression profiles with bone mineral density variations in women H He, S Cao, T Niu, Y Zhou, L Zhang, Y Zeng, W Zhu, Y Wang, H Deng PLoS One 11 (1), e0147475, 2016 | 16 | 2016 |
| Identification of significant genetic variants via SLOPE, and its extension to group SLOPE A Gossmann, S Cao, YP Wang Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 12 | 2015 |
| Unified tests for fine scale mapping and identifying sparse high-dimensional sequence associations S Cao, H Qin, A Gossmann, HW Deng, YP Wang Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 10 | 2015 |
| A unified sparse representation for sequence variant identification for complex traits S Cao, H Qin, HW Deng, YP Wang Genetic epidemiology 38 (8), 671-679, 2014 | 10 | 2014 |
| The effective diagnosis of schizophrenia by using multi-layer RBMs deep networks C Qiao, DD Lin, SL Cao, YP Wang 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 9 | 2015 |
| A sparse regression method for group-wise feature selection with false discovery rate control A Gossmann, S Cao, D Brzyski, LJ Zhao, HW Deng, YP Wang IEEE/ACM transactions on computational biology and bioinformatics 15 (4 …, 2017 | 7 | 2017 |
