| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1682 | 2020 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 951 | 2020 |
| Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 339 | 2021 |
| Immuno-genomic landscape of osteosarcoma CC Wu, HC Beird, J Andrew Livingston, S Advani, A Mitra, S Cao, ... Nature communications 11 (1), 1008, 2020 | 190 | 2020 |
| Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse S Taavitsainen, N Engedal, S Cao, F Handle, A Erickson, S Prekovic, ... Nature communications 12 (1), 5307, 2021 | 80 | 2021 |
| Transcriptome deconvolution of heterogeneous tumor samples with immune infiltration Z Wang, S Cao, JS Morris, J Ahn, R Liu, S Tyekucheva, F Gao, B Li, W Lu, ... IScience 9, 451-460, 2018 | 71 | 2018 |
| Adaptive sparse multiple canonical correlation analysis with application to imaging (epi) genomics study of schizophrenia W Hu, D Lin, S Cao, J Liu, J Chen, VD Calhoun, YP Wang IEEE Transactions on Biomedical Engineering 65 (2), 390-399, 2017 | 62 | 2017 |
| Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression S Cao, JR Wang, S Ji, P Yang, Y Dai, S Guo, MD Montierth, JP Shen, ... Nature biotechnology 40 (11), 1624-1633, 2022 | 49 | 2022 |
| Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... Nature communications 11 (1), 731, 2020 | 48 | 2020 |
| Identifying stages of kidney renal cell carcinoma by combining gene expression and DNA methylation data SP Deng, S Cao, DS Huang, YP Wang IEEE/ACM transactions on computational biology and bioinformatics 14 (5 …, 2016 | 44 | 2016 |
| Inferring structural variant cancer cell fraction M Cmero, K Yuan, CS Ong, J Schröder, NM Corcoran, T Papenfuss, ... Nature communications 11 (1), 730, 2020 | 39 | 2020 |
| PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-54, 2021 | 30 | 2021 |
| A statistical test for differential network analysis based on inference of Gaussian graphical model H He, S Cao, J Zhang, H Shen, YP Wang, H Deng Scientific reports 9 (1), 10863, 2019 | 25 | 2019 |
| Network-based meta-analyses of associations of multiple gene expression profiles with bone mineral density variations in women H He, S Cao, T Niu, Y Zhou, L Zhang, Y Zeng, W Zhu, Y Wang, H Deng PLoS One 11 (1), e0147475, 2016 | 22 | 2016 |
| A Systems Genetics Approach Identified GPD1L and its Molecular Mechanism for Obesity in Human Adipose Tissue H He, D Sun, Y Zeng, R Wang, W Zhu, S Cao, GA Bray, W Chen, H Shen, ... Scientific reports 7 (1), 1799, 2017 | 21 | 2017 |
| Transcriptome deconvolution of heterogeneous tumor samples with immune infiltration. iScience 9 Z Wang, S Cao, JS Morris, J Ahn, R Liu, S Tyekucheva, F Gao, B Li, W Lu, ... | 16 | 2018 |
| The origin of bladder cancer from mucosal field effects J Bondaruk, R Jaksik, Z Wang, D Cogdell, S Lee, Y Chen, KN Dinh, ... Iscience 25 (7), 2022 | 15 | 2022 |
| Variation of PPARG Expression in Chemotherapy‐Sensitive Patients of Hypopharyngeal Squamous Cell Carcinoma M Lian, Y Tao, J Chen, X Shen, L Hou, S Cao, J Fang PPAR research 2021 (1), 5525091, 2021 | 12 | 2021 |
| Identification of significant genetic variants via SLOPE, and its extension to group SLOPE A Gossmann, S Cao, YP Wang Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 12 | 2015 |
| A unified sparse representation for sequence variant identification for complex traits S Cao, H Qin, HW Deng, YP Wang Genetic epidemiology 38 (8), 671-679, 2014 | 10 | 2014 |
