Jaime A Castro-Mondragon
Jaime A Castro-Mondragon
Centre for Molecular Medicine Norway (NCMM)
Verified email at - Homepage
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JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ...
Nucleic acids research 48 (D1), D87-D92, 2020
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ...
Nucleic acids research 44 (D1), D133-D143, 2016
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
Genome-wide characterization of mammalian promoters with distal enhancer functions
L Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ...
Nature genetics 49 (7), 1073-1081, 2017
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ...
Nucleic acids research 46 (W1), W209-W214, 2018
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ...
Nucleic acids research 50 (D1), D165-D173, 2022
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections
JA Castro-Mondragon, S Jaeger, D Thieffry, M Thomas-Chollier, ...
Nucleic Acids Research 45 (13), e119-e119, 2017
Genomic basis of symbiovar mimosae in Rhizobium etli
MA Rogel, P Bustos, RI Santamaría, V González, D Romero, MÁ Cevallos, ...
BMC genomics 15 (1), 1-10, 2014
Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer
MR Aure, T Fleischer, S Bjørklund, J Ankill, JA Castro-Mondragon, ...
Genome medicine 13 (1), 1-21, 2021
Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase
H Taboada, N Meneses, MF Dunn, C Vargas-Lagunas, N Buchs, ...
Microbiology 165 (6), 2018
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example
N Ksouri, JA Castro-Mondragón, F Montardit-Tarda, J van Helden, ...
Plant physiology 185 (3), 1242-1258, 2021
RSAT:: Plants: motif discovery within clusters of upstream sequences in plant genomes
B Contreras-Moreira, JA Castro-Mondragon, C Rioualen, ...
Plant Synthetic Promoters, 279-295, 2016
UniBind: maps of high-confidence direct TF-DNA interactions across nine species
RR Puig, P Boddie, A Khan, JA Castro-Mondragon, A Mathelier
BMC Genomics, 2021
RSAT:: Plants: Motif discovery in ChIP-Seq peaks of plant genomes
JA Castro-Mondragon, C Rioualen, B Contreras-Moreira, J Helden
Plant Synthetic Promoters, 297-322, 2016
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of the gene regulatory program in cancers
JA Castro-Mondragon, MR Aure, OC Lingjærde, A Langerød, ...
BioRxiv, 2020
Genetic architecture of natural variations of cardiac performance in flies
S Saha, L Spinelli, JA Castro-Mondragon, A Kervadec, L Kremmer, ...
bioRxiv, 2021
RSAT 2022: regulatory sequence analysis tools
W Santana-Garcia, J Castro-Mondragon, M Padilla-Gálvez, N Nguyen, ...
Nucleic Acids Research, 2022
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response
D Santiago-Algarra, C Souaid, H Singh, L Dao, S Hussain, ...
Nature communications 12 (1), 1-18, 2021
RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach
H Taboada-Castro, JA Castro-Mondragón, A Aguilar-Vera, ...
Frontiers in Microbiology 11, 2766, 2020
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Articles 1–20