Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 996 | 2017 |
Common workflow language, v1. 0 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... figshare, 2016 | 189 | 2016 |
Methods included: standardizing computational reuse and portability with the common workflow language MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022 | 109 | 2022 |
Taking topic detection from evaluation to practice J Allan, S Harding, D Fisher, A Bolivar, S Guzman-Lara, P Amstutz Proceedings of the 38th Annual Hawaii International Conference on System …, 2005 | 95 | 2005 |
Common workflow language P Amstutz, MR Crusoe, N Tijanic, B Chapman, J Chilton, M Heuer, ... V1. 0 UK: Figshare, 2016 | 30 | 2016 |
Real time visualization of robot state with mobile virtual reality P Amstutz, AH Fagg Proceedings 2002 IEEE International Conference on Robotics and Automation …, 2002 | 28 | 2002 |
Common Workflow Language, v1. 0; 2016 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... DOI 10, m9, 2019 | 26 | 2019 |
Rapid and efficient analysis of 20,000 RNA-seq samples with Toil J Vivian, A Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... bioRxiv, 062497, 2016 | 26 | 2016 |
Maya Nedeljkovich, et al. 2016 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Common workflow language, v1. 0, 2016 | 22 | 2016 |
Common workflow language, v1. 0. figshare P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Common workflow language v1. 0. figshare, 2016 | 21 | 2016 |
Existing workflow systems. P Amstutz (No Title), 2021 | 18 | 2021 |
Common Workflow Language, v1. 0. Specification, Common Workflow Language working group P Amstutz, M Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Peter Amstutz MRC, Nebojša Tijanic, editor, 2016 | 15 | 2016 |
Common Workflow Language, v1. 0. figshare 2016 P Amstutz, MR Crusoe, N Tijanic, B Chapman, J Chilton, M Heuer, ... Publisher Full Text, 0 | 12 | |
Common workflow language, v1. 0 B Chapman, J Chilton, M Heuer, A Kartashov, D Leehr, H Ménager, ... Specification, common workflow language working group. Amstutz P, Crusoe MR …, 2016 | 9 | 2016 |
Common workflow language, draft 3 P Amstutz, R Andeer, B Chapman, J Chilton, MR Crusoe, R Valls Guimera, ... | 9 | 2016 |
Common workflow language, v1. 0. specification P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Common Workflow Language working group, 2016 | 9 | 2016 |
BioHackathon 2015: Semantics of data for life sciences and reproducible research RA Vos, T Katayama, H Mishima, S Kawano, S Kawashima, JD Kim, ... F1000Research 9, 2020 | 8 | 2020 |
Tiling the genome into consistently named subsequences enables precision medicine and machine learning with millions of complex individual data-sets S Guthrie, A Connelly, P Amstutz, AF Berrey, N Cesar, J Chen, ... PeerJ PrePrints, 2015 | 5 | 2015 |
Portable, reproducible analysis with arvados P Amstutz F1000Research 4, 114, 2015 | 5 | 2015 |
Portable workflow and tool descriptions with the CWL P Amstutz, N Tijanić, S Soiland-Reyes, J Kern, L Stojanovic, T Pierce, ... Bioinformatics Open Source Conference, 2015 | 4 | 2015 |