| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 798 | 2020 |
| Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context M Morgenstern, CD Peikert, P Lübbert, I Suppanz, C Klemm, O Alka, ... Cell metabolism 33 (12), 2464-2483. e18, 2021 | 128 | 2021 |
| Current challenges in plant eco-metabolomics K Peters, A Worrich, A Weinhold, O Alka, G Balcke, C Birkemeyer, ... International Journal of Molecular Sciences 19 (5), 1385, 2018 | 121 | 2018 |
| OpenMS–a platform for reproducible analysis of mass spectrometry data J Pfeuffer, T Sachsenberg, O Alka, M Walzer, A Fillbrunn, L Nilse, ... Journal of biotechnology 261, 142-148, 2017 | 90 | 2017 |
| mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics N Hoffmann, J Rein, T Sachsenberg, J Hartler, K Haug, G Mayer, O Alka, ... Analytical chemistry 91 (5), 3302-3310, 2019 | 53 | 2019 |
| Untargeted metabolomics reveals molecular effects of ketogenic diet on healthy and tumor xenograft mouse models D Licha, S Vidali, S Aminzadeh-Gohari, O Alka, L Breitkreuz, ... International journal of molecular sciences 20 (16), 3873, 2019 | 33 | 2019 |
| SmartPeak automates targeted and quantitative metabolomics data processing S Kutuzova, P Colaianni, H Rost, T Sachsenberg, O Alka, O Kohlbacher, ... Analytical Chemistry 92 (24), 15968-15974, 2020 | 23 | 2020 |
| DIAproteomics: A multifunctional data analysis pipeline for data-independent acquisition proteomics and peptidomics L Bichmann, S Gupta, G Rosenberger, L Kuchenbecker, T Sachsenberg, ... Journal of proteome research 20 (7), 3758-3766, 2021 | 22 | 2021 |
| Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS N Cain, O Alka, T Segelke, K von Wuthenau, O Kohlbacher, M Fischer Food chemistry 298, 125013, 2019 | 21 | 2019 |
| DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics O Alka, P Shanthamoorthy, M Witting, K Kleigrewe, O Kohlbacher, ... Nature Communications 13 (1), 1347, 2022 | 13 | 2022 |
| Metabolomics data processing using OpenMS M Rurik, O Alka, F Aicheler, O Kohlbacher Computational Methods and Data Analysis for Metabolomics, 49-60, 2020 | 9 | 2020 |
| UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis EE Kontou, A Walter, O Alka, J Pfeuffer, T Sachsenberg, OS Mohite, ... Journal of Cheminformatics 15 (1), 52, 2023 | 8 | 2023 |
| Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells T Scheidt, O Alka, H Gonczarowska-Jorge, W Gruber, F Rathje, ... Cell Communication and Signaling 18, 1-18, 2020 | 7 | 2020 |
| OpenMS and KNIME for Mass Spectrometry Data Processing O Alka, T Sachsenberg, L Bichmann, J Pfeuffer, H Weisser, S Wein, ... | 5* | 2020 |
| Investigation of the anti-cancer potential of epoxyazadiradione in neuroblastoma: experimental assays and molecular analysis S Chandel, A Bhattacharya, A Gautam, W Zeng, O Alka, T Sachsenberg, ... Journal of Biomolecular Structure and Dynamics, 1-19, 2023 | 1 | 2023 |
| OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, O Alka, L Nilse, ... Nature Methods, 1-3, 2024 | | 2024 |
| Method Development in Metabolomics O Alka Universität Tübingen, 2023 | | 2023 |
| OpenMS 3 expands the frontiers of open-source computational mass spectrometry T Sachsenberg, J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, ... | | 2023 |
| OpenSWATH Enables Automated Data Processing for Data-Independent Acquisition in Metabolomics O Alka, M Witting, K Kleigrewe, O Kohlbacher, L Röst | | 2019 |
| Current challenges in eco-metabolomics K Peters, A Worrich, A Weinhold, O Alka, G Balcke, C Birkemeyer International Journal of Molecular Sciences, 0 | | |
