Wenqiang Shi
Wenqiang Shi
Beijing Institute of Microbiology and Epidemiology
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Year
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2016
9542016
Identification of altered cis-regulatory elements in human disease
A Mathelier, W Shi, WW Wasserman
Trends in Genetics 31 (2), 67-76, 2015
992015
Deep learning in omics: a survey and guideline
Z Zhang, Y Zhao, X Liao, W Shi, K Li, Q Zou, S Peng
Briefings in functional genomics 18 (1), 41-57, 2019
722019
Genome-wide prediction of cis-regulatory regions using supervised deep learning methods
Y Li, W Shi, WW Wasserman
BMC bioinformatics 19 (1), 1-14, 2018
702018
Evaluating the impact of single nucleotide variants on transcription factor binding
W Shi, O Fornes, A Mathelier, WW Wasserman
Nucleic acids research 44 (21), 10106-10116, 2016
472016
Large-scale comparative analyses of tick genomes elucidate their genetic diversity and vector capacities
N Jia, J Wang, W Shi, L Du, Y Sun, W Zhan, JF Jiang, Q Wang, B Zhang, ...
Cell 182 (5), 1328-1340. e13, 2020
312020
Meteorological conditions and nonpharmaceutical interventions jointly determined local transmissibility of COVID-19 in 41 Chinese cities: A retrospective observational study
LQ Fang, HY Zhang, H Zhao, TL Che, AR Zhang, MJ Liu, WQ Shi, JP Guo, ...
The Lancet Regional Health-Western Pacific 2, 100020, 2020
232020
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
C Chen, W Shi, BP Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ...
Scientific reports 6 (1), 1-14, 2016
212016
Epidemiological parameters of COVID-19 and its implication for infectivity among patients in China, 1 January to 11 February 2020
QB Lu, Y Zhang, MJ Liu, HY Zhang, N Jalali, AR Zhang, JC Li, H Zhao, ...
Eurosurveillance 25 (40), 2000250, 2020
132020
Epidemiology and ecology of severe fever with thrombocytopenia syndrome in China, 2010‒2018
D Miao, MJ Liu, YX Wang, X Ren, QB Lu, GP Zhao, K Dai, XL Li, H Li, ...
Clinical Infectious Diseases, 2020
82020
Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants
W Shi, O Fornes, WW Wasserman
Bioinformatics 35 (15), 2610-2617, 2019
82019
Epidemiology and evolution of Middle East respiratory syndrome coronavirus, 2012–2020
AR Zhang, WQ Shi, K Liu, XL Li, MJ Liu, WH Zhang, GP Zhao, JJ Chen, ...
Infectious Diseases of Poverty 10 (1), 1-13, 2021
52021
Mapping the global potential transmission hotspots for severe fever with thrombocytopenia syndrome by machine learning methods
D Miao, K Dai, GP Zhao, XL Li, WQ Shi, JS Zhang, Y Yang, W Liu, ...
Emerging microbes & infections 9 (1), 817-826, 2020
52020
VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism
D Dong, W Su, W Shi, Q Zou, S Peng
Journal of genetics and genomics= Yi chuan xue bao 45 (7), 407-410, 2018
42018
Cutaneous immunoprofiles of three spotted fever group rickettsia cases
N Jia, HB Liu, YC Zheng, WQ Shi, R Wei, YL Chu, NZ Ning, BG Jiang, ...
Infection and immunity 88 (4), e00686-19, 2020
12020
Altered transcription factor binding events predict personalized gene expression and confer insight into functional cis-regulatory variants
W Shi, O Fornes, WW Wasserman
bioRxiv, 228155, 2017
12017
Reply to Evidence that microbes identified as tick-borne pathogens are nutritional endosymbionts
N Jia, J Wang, L Du, W Shi, F Zhao, WC Cao
Cell 184 (9), 2261-2262, 2021
2021
Distribution of Dermacentor silvarum and Associated Pathogens: Meta-Analysis of Global Published Data and a Field Survey in China
WB Guo, WQ Shi, Q Wang, YS Pan, QC Chang, BG Jiang, JX Cheng, ...
International journal of environmental research and public health 18 (9), 4430, 2021
2021
Haemaphysalis longicornis
N Jia, J Wang, W Shi, L Du, RZ Ye, F Zhao, WC Cao
Trends in genetics: TIG, S0168-9525 (20) 30325-5, 2020
2020
Distribution and characteristics of Beilong virus among wild rodents and shrews in China
JJ Chen, XA Zhang, H Fan, FC Jiang, MZ Jin, K Dai, N Wang, PH Zhang, ...
Infection, Genetics and Evolution 85, 104454, 2020
2020
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