| Comprehensive molecular characterization of urothelial bladder carcinoma Cancer Genome Atlas Research Network Nature 507 (7492), 315, 2014 | 2473 | 2014 |
| The molecular taxonomy of primary prostate cancer A Abeshouse, J Ahn, R Akbani, A Ally, S Amin, CD Andry, M Annala, ... Cell 163 (4), 1011-1025, 2015 | 2397 | 2015 |
| The somatic genomic landscape of chromophobe renal cell carcinoma CF Davis, CJ Ricketts, M Wang, L Yang, AD Cherniack, H Shen, C Buhay, ... Cancer cell 26 (3), 319-330, 2014 | 752 | 2014 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 744 | 2020 |
| Comprehensive pan-genomic characterization of adrenocortical carcinoma S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ... Cancer cell 29 (5), 723-736, 2016 | 590 | 2016 |
| Prediction of germline mutations and cancer risk in the Lynch syndrome S Chen, W Wang, S Lee, K Nafa, J Lee, K Romans, P Watson, SB Gruber, ... Jama 296 (12), 1479-1487, 2006 | 432 | 2006 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 301 | 2015 |
| MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data Y Fan, L Xi, DST Hughes, J Zhang, J Zhang, PA Futreal, DA Wheeler, ... Genome biology 17 (1), 1-11, 2016 | 248 | 2016 |
| PancPRO: risk assessment for individuals with a family history of pancreatic cancer W Wang, S Chen, KA Brune, RH Hruban, G Parmigiani, AP Klein Journal of clinical oncology: official journal of the American Society of …, 2007 | 216 | 2007 |
| Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 214 | 2021 |
| Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 190 | 2021 |
| Pan-cancer analysis of whole genomes T Hu, Y Kumar, EZ Ma, Z Wu, H Xue Nature, 2020 | 182 | 2020 |
| Immuno-genomic landscape of osteosarcoma CC Wu, HC Beird, J Andrew Livingston, S Advani, A Mitra, S Cao, ... Nature communications 11 (1), 1008, 2020 | 141 | 2020 |
| DeMix: deconvolution for mixed cancer transcriptomes using raw measured data J Ahn, Y Yuan, G Parmigiani, MB Suraokar, L Diao, II Wistuba, W Wang Bioinformatics 29 (15), 1865-1871, 2013 | 107 | 2013 |
| An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16, 1-13, 2015 | 104 | 2015 |
| BayesMendel: an R environment for Mendelian risk prediction S Chen, W Wang, KW Broman, HA Katki, G Parmigiani Statistical applications in genetics and molecular biology 3 (1), 2004 | 87 | 2004 |
| Siah1 interacts with the scaffold protein POSH to promote JNK activation and apoptosis Z Xu, A Sproul, W Wang, N Kukekov, LA Greene Journal of Biological Chemistry 281 (1), 303-312, 2006 | 73 | 2006 |
| Neutral tumor evolution? M Tarabichi, I Martincorena, M Gerstung, AM Leroi, F Markowetz, ... Nature genetics 50 (12), 1630-1633, 2018 | 68 | 2018 |
| High-quality DNA sequence capture of 524 disease candidate genes P Shen, W Wang, S Krishnakumar, C Palm, AK Chi, GM Enns, RW Davis, ... Proceedings of the National Academy of Sciences 108 (16), 6549-6554, 2011 | 68 | 2011 |
| Rare variant detection using family-based sequencing analysis G Peng, Y Fan, TB Palculict, P Shen, EC Ruteshouser, AK Chi, RW Davis, ... Proceedings of the National Academy of Sciences 110 (10), 3985-3990, 2013 | 67 | 2013 |
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
