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Gregory Humphrey
Gregory Humphrey
Verified email at ucsd.edu
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Year
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
21922017
Improved bacterial 16S rRNA gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys
W Walters, ER Hyde, D Berg-Lyons, G Ackermann, G Humphrey, ...
Msystems 1 (1), 10.1128/msystems. 00009-15, 2016
14422016
Cohabiting family members share microbiota with one another and with their dogs
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...
elife 2, e00458, 2013
11552013
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
JL Metcalf, L Wegener Parfrey, A Gonzalez, CL Lauber, D Knights, ...
elife 2, e01104, 2013
3792013
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight
MSystems 1 (3), 10.1128/msystems. 00021-16, 2016
3732016
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...
The ISME journal 13 (3), 576-587, 2019
2602019
Translocation of viable gut microbiota to mesenteric adipose drives formation of creeping fat in humans
CWY Ha, A Martin, GD Sepich-Poore, B Shi, Y Wang, K Gouin, ...
Cell 183 (3), 666-683. e17, 2020
2432020
Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats
SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato, MW Taylor, F Mazel, ...
MBio 11 (1), 10.1128/mbio. 02901-19, 2020
2272020
The impact of skin care products on skin chemistry and microbiome dynamics
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17, 1-20, 2019
1552019
Exposure to toxic metals triggers unique responses from the rat gut microbiota
JB Richardson, BCR Dancy, CL Horton, YS Lee, MS Madejczyk, ZZ Xu, ...
Scientific Reports 8 (1), 6578, 2018
1142018
Intermittent hypoxia and hypercapnia, a hallmark of obstructive sleep apnea, alters the gut microbiome and metabolome
A Tripathi, AV Melnik, J Xue, O Poulsen, MJ Meehan, G Humphrey, ...
Msystems 3 (3), 10.1128/msystems. 00020-18, 2018
1032018
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
Msystems 5 (2), 10.1128/msystems. 00901-19, 2020
1022020
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ...
Genome research 30 (6), 898-909, 2020
862020
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
A Salosensaari, V Laitinen, AS Havulinna, G Meric, S Cheng, M Perola, ...
Nature communications 12 (1), 2671, 2021
852021
Association between the gut microbiota and blood pressure in a population cohort of 6953 individuals
J Palmu, A Salosensaari, AS Havulinna, S Cheng, M Inouye, M Jain, ...
Journal of the American Heart Association 9 (15), e016641, 2020
832020
Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome
RA Quinn, S Adem, RH Mills, W Comstock, L DeRight Goldasich, ...
Microbiome 7, 1-13, 2019
622019
The oral and skin microbiomes of captive komodo dragons are significantly shared with their habitat
ER Hyde, JA Navas-Molina, SJ Song, JG Kueneman, G Ackermann, ...
Msystems 1 (4), 10.1128/msystems. 00046-16, 2016
622016
Associations of healthy food choices with gut microbiota profiles
KK Koponen, A Salosensaari, MO Ruuskanen, AS Havulinna, S Männistö, ...
The American journal of clinical nutrition 114 (2), 605-616, 2021
602021
Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection
A Mu, D McDonald, AK Jarmusch, C Martino, C Brennan, M Bryant, ...
Microbiome 9, 1-8, 2021
502021
The urinary tract microbiome in older women exhibits host genetic and environmental influences
AS Adebayo, G Ackermann, RCE Bowyer, PM Wells, G Humphreys, ...
Cell Host & Microbe 28 (2), 298-305. e3, 2020
482020
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Articles 1–20