| Nucleosome organization in the Drosophila genome TN Mavrich, C Jiang, IP Ioshikhes, X Li, BJ Venters, SJ Zanton, ... Nature 453 (7193), 358-362, 2008 | 879 | 2008 |
| A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome TN Mavrich, IP Ioshikhes, BJ Venters, C Jiang, LP Tomsho, J Qi, ... Genome research 18 (7), 1073-1083, 2008 | 814 | 2008 |
| Large-scale human promoter mapping using CpG islands IP Ioshikhes, MQ Zhang Nature genetics 26 (1), 61-63, 2000 | 382 | 2000 |
| Nucleosome positions predicted through comparative genomics IP Ioshikhes, I Albert, SJ Zanton, BF Pugh Nature genetics 38 (10), 1210-1215, 2006 | 379 | 2006 |
| Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences I Ioshikhes, A Bolshoy, K Derenshteyn, M Borodovsky, EN Trifonov Journal of molecular biology 262 (2), 129-139, 1996 | 247 | 1996 |
| Human milk metagenome: a functional capacity analysis TL Ward, S Hosid, I Ioshikhes, I Altosaar BMC microbiology 13, 1-12, 2013 | 241 | 2013 |
| Synergy of human Pol II core promoter elements revealed by statistical sequence analysis NI Gershenzon, IP Ioshikhes Bioinformatics 21 (8), 1295-1300, 2005 | 238 | 2005 |
| Functional characterization of core promoter elements: the downstream core element is recognized by TAF1 DH Lee, N Gershenzon, M Gupta, IP Ioshikhes, D Reinberg, BA Lewis Molecular and cellular biology, 2005 | 165 | 2005 |
| Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution M Babcock, A Pavlicek, E Spiteri, CD Kashork, I Ioshikhes, LG Shaffer, ... Genome Research 13 (12), 2519-2532, 2003 | 164 | 2003 |
| A multi-tissue analysis identifies HLA complex group 9 gene methylation differences in bipolar disorder Z Kaminsky, M Tochigi, P Jia, M Pal, J Mill, A Kwan, I Ioshikhes, ... Molecular psychiatry 17 (7), 728-740, 2012 | 158 | 2012 |
| Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites NI Gershenzon, GD Stormo, IP Ioshikhes Nucleic acids research 33 (7), 2290-2301, 2005 | 127 | 2005 |
| Snf2h-mediated chromatin organization and histone H1 dynamics govern cerebellar morphogenesis and neural maturation M Alvarez-Saavedra, Y De Repentigny, PS Lagali, EVS Raghu Ram, ... Nature communications 5 (1), 4181, 2014 | 86 | 2014 |
| Variety of genomic DNA patterns for nucleosome positioning I Ioshikhes, S Hosid, BF Pugh Genome research 21 (11), 1863-1871, 2011 | 75 | 2011 |
| Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure I Ioshikhes, EN Trifonov, MQ Zhang Proceedings of the National Academy of Sciences 96 (6), 2891-2895, 1999 | 75 | 1999 |
| The features of Drosophila core promoters revealed by statistical analysis NI Gershenzon, EN Trifonov, IP Ioshikhes BMC genomics 7, 1-13, 2006 | 73 | 2006 |
| Voluntary running triggers VGF-mediated oligodendrogenesis to prolong the lifespan of Snf2h-null ataxic mice M Alvarez-Saavedra, Y De Repentigny, D Yang, RW O’Meara, K Yan, ... Cell reports 17 (3), 862-875, 2016 | 49 | 2016 |
| Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences I Ioshikhes, A Bolshoy, EN Trifonov Journal of Biomolecular Structure and Dynamics 9 (6), 1111-1117, 1992 | 49 | 1992 |
| Nucleosomal DNA sequence database. I Ioshikhes, EN Trifonov Nucleic acids research 21 (21), 4857, 1993 | 48 | 1993 |
| Restriction landmark genomic scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations DJ Smiraglia, R Kazhiyur-Mannar, CC Oakes, YZ Wu, P Liang, T Ansari, ... BMC genomics 8, 1-18, 2007 | 46 | 2007 |
| Algorithms for mapping of mRNA targets for microRNA I Ioshikhes, S Roy, CK Sen DNA and cell biology 26 (4), 265-272, 2007 | 45 | 2007 |
