| Phylogeny of Gobiidae and identification of gobiid lineages CE Thacker, DM Roje Systematics and Biodiversity 9 (4), 329-347, 2011 | 191 | 2011 |
| Phylogeny of cardinalfishes (Teleostei: Gobiiformes: Apogonidae) and the evolution of visceral bioluminescence CE Thacker, DM Roje Molecular Phylogenetics and Evolution 52 (3), 735-745, 2009 | 67 | 2009 |
| Phylogeny and evolution of Indo-Pacific shrimp-associated gobies (Gobiiformes: Gobiidae) CE Thacker, AR Thompson, DM Roje Molecular phylogenetics and evolution 59 (1), 168-176, 2011 | 44 | 2011 |
| Incorporating molecular phylogenetics with larval morphology while mitigating the effects of substitution saturation on phylogeny estimation: A new hypothesis of relationships … DM Roje Molecular Phylogenetics and Evolution 56 (2), 586-600, 2010 | 40 | 2010 |
| New expansions in old clades: population genetics and phylogeny of Gnatholepis species (Teleostei: Gobioidei) in the Pacific CE Thacker, AR Thompson, DM Roje, EY Shaw Marine biology 153, 375-385, 2008 | 18 | 2008 |
| Evaluating the effects of non-neutral molecular markers on phylogeny inference DM Roje PLoS One 9 (2), e87428, 2014 | 15 | 2014 |
| Characterization of 16 microsatellite loci for a common coral reef fish, the fierce shrimpgoby Ctenogobiops feroculus AR Thompson, CE Thacker, EY Shaw, DM Roje Molecular ecology notes 6 (3), 918-920, 2006 | 2 | 2006 |
| Molecular Phylogeny and Larval Morphology: A New Hypothesis of Relationships for the Flatfish Family Pleuronectidae (Percomorpha: Pleuronectiformes) DM Roje University of Washington, 2009 | 1 | 2009 |
| Molecules, morphology and monophyly: resolving pleuronectiform phylogeny and investigating why it has been so difficult to do. DM Roje | | 2014 |
