|Real-time, portable genome sequencing for Ebola surveillance|
J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ...
Nature 530 (7589), 228, 2016
|Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157|
TJ Dallman, L Byrne, PM Ashton, LA Cowley, NT Perry, G Adak, ...
Clinical Infectious Diseases 61 (3), 305-312, 2015
|Unique human immune signature of Ebola virus disease in Guinea|
P Ruibal, L Oestereich, A Lüdtke, B Becker-Ziaja, DM Wozniak, R Kerber, ...
Nature 533 (7601), 100, 2016
|An investigation of the diversity of strains of enteroaggregative Escherichia coli isolated from cases associated with a large multi-pathogen foodborne outbreak in the UK|
TJ Dallman, MA Chattaway, LA Cowley, M Doumith, R Tewolde, ...
PloS one 9 (5), e98103, 2014
|Analysis of whole genome sequencing for the Escherichia coli O157: H7 typing phages|
LA Cowley, SJ Beckett, M Chase-Topping, N Perry, TJ Dallman, DL Gally, ...
BMC genomics 16 (1), 271, 2015
|ESBL-producing and macrolide-resistant Shigella sonnei infections among men who have sex with men, England, 2015|
P Mook, J McCormick, M Bains, LA Cowley, MA Chattaway, C Jenkins, ...
Emerging infectious diseases 22 (11), 1948, 2016
|Different features of Vδ2 T and NK cells in fatal and non-fatal human Ebola infections|
E Cimini, D Viola, M Cabeza-Cabrerizo, A Romanelli, N Tumino, A Sacchi, ...
PLoS neglected tropical diseases 11 (5), e0005645, 2017
|A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients|
MA Tariq, FLC Everest, LA Cowley, A De Soyza, GS Holt, SH Bridge, ...
Frontiers in microbiology 6, 97, 2015
|Short-term evolution of Shiga toxin-producing Escherichia coli O157: H7 between two food-borne outbreaks|
LA Cowley, TJ Dallman, S Fitzgerald, N Irvine, PJ Rooney, SP McAteer, ...
Microbial genomics 2 (9), 2016
|Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing|
S Shaaban, LA Cowley, SP McAteer, C Jenkins, TJ Dallman, JL Bono, ...
Microbial genomics 2 (12), 2016
|Evolution via recombination: Cell-to-cell contact facilitates larger recombination events in Streptococcus pneumoniae|
LA Cowley, FC Petersen, R Junges, MJD Jimenez, DA Morrison, ...
PLoS genetics 14 (6), e1007410, 2018
|Lineage calling can identify antibiotic resistant clones within minutes|
K Břinda, A Callendrello, L Cowley, T Charalampous, RS Lee, ...
bioRxiv, 403204, 2018
|Evolutionary Context of Non–Sorbitol-Fermenting Shiga Toxin–Producing Escherichia coli O55: H7|
K Schutz, LA Cowley, S Shaaban, A Carroll, E McNamara, DL Gally, ...
Emerging infectious diseases 23 (12), 1966, 2017
|Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157|
LA Cowley, AS Low, D Pickard, CJ Boinett, TJ Dallman, M Day, N Perry, ...
mBio 9 (4), e00705-18, 2018
|Final report of ENGAGE‐Establishing Next Generation sequencing Ability for Genomic analysis in Europe|
RS Hendriksen, SK Pedersen, P Leekitcharoenphon, B Malorny, ...
EFSA Supporting Publications 15 (6), 1431E, 2018
|Use of genome sequencing to investigate the molecular basis of bacteriaphage interaction of the Escherichia coli O157 typing phages and the elucidation of the biological and …|
The University of Edinburgh, 2017
|Laboratory findings, compassionate use of favipiravir, and outcome in patients with Ebola virus disease, Guinea, 2015—a retrospective observational study|
R Kerber, E Lorenz, S Duraffour, D Sissoko, M Rudolf, A Jaeger, SD Cisse, ...
The Journal of infectious diseases, 2019
|Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission|
MA Martin, RS Lee, LA Cowley, JL Gardy, WP Hanage
Microbial genomics 4 (10), 2018
|Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005–2016|
LA Cowley, DR Oresegun, MA Chattaway, TJ Dallman, C Jenkins
Journal of medical microbiology 67 (6), 884-888, 2018
|Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015|
A Pini, D Zomahoun, S Duraffour, T Derrough, M Charles, J Quick, ...
Eurosurveillance 23 (12), 2018