Michael Hucka
Title
Cited by
Cited by
Year
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
31992003
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419, 2013
8952013
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
N Le Novère, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ...
Nucleic Acids Research 34 (suppl 1), D689-D691, 2006
8332006
The systems biology graphical notation
N Le Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8092009
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
5882010
Minimum information requested in the annotation of biochemical models (MIRIAM)
N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ...
Nature biotechnology 23 (12), 1509-1515, 2005
5832005
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
5812008
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
BMC systems biology 4 (1), 92, 2010
5422010
Rules for modeling signal-transduction systems
WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana
Sci STKE 344, 2006, 2006
4062006
LibSBML: an API library for SBML
BJ Bornstein, SM Keating, A Jouraku, M Hucka
Bioinformatics 24 (6), 880, 2008
3702008
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration
HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano
Omics A Journal of Integrative Biology 7 (4), 355-372, 2003
3252003
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project
M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ...
Systems Biology 1 (1), 41-53, 2004
2722004
Systems biology markup language: Level 2 and beyond
A Finney, M Hucka
Biochemical Society Transactions 31 (6), 1472-1473, 2003
2512003
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2015
2282015
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 2011
2252011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 198, 2011
1942011
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
1612019
Towards NeuroML: model description methods for collaborative modelling in neuroscience
NH Goddard, M Hucka, F Howell, H Cornelis, K Shankar, D Beeman
Philosophical Transactions of the Royal Society of London. Series B …, 2001
1572001
SBMLToolbox: an SBML toolbox for MATLAB users
SM Keating, BJ Bornstein, A Finney, M Hucka
Bioinformatics 22 (10), 1275-1277, 2006
1532006
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ...
Nature Publishing Group, 2010
137*2010
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Articles 1–20