Michael Zimmermann

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Uwe SauerVerifisert e-postadresse på ethz.ch
Maria Zimmermann-KogadeevaGroup LeaderVerifisert e-postadresse på embl.de
Andrew L GoodmanDirector, Microbial Sciences Institute; C.N.H. Long Professor of Microbial Pathogenesis, YaleVerifisert e-postadresse på yale.edu
Nassos TypasGroup Leader, EMBLVerifisert e-postadresse på embl.de
Rob LavigneFull Professor, Laboratory of Gene Technology, University of LeuvenVerifisert e-postadresse på kuleuven.be
Jeroen De SmetPostdoctoral fellow, KU LeuvenVerifisert e-postadresse på kuleuven.be
Nicola ZamboniInstitute of Molecular Systems Biology, ETH ZurichVerifisert e-postadresse på ethz.ch
Lisa MaierUniversity of TübingenVerifisert e-postadresse på uni-tuebingen.de
Michael A FischbachStanford UniversityVerifisert e-postadresse på fischbachgroup.org
Peer BorkDirector of EMBL HeidelbergVerifisert e-postadresse på embl.de
Michael Kuhnresearch staff scientist & research coordinator in the lab of Peer Bork, EMBLVerifisert e-postadresse på embl.de
Martin GengenbacherAssociate Member, Center for Discovery and Innovation, Hackensack Meridian HealthVerifisert e-postadresse på hmh-cdi.org
Pieter-Jan CeyssensSciensano, BELVerifisert e-postadresse på sciensano.be
Clifton E Barry IIINIAIDVerifisert e-postadresse på niaid.nih.gov
Mohamed S. DoniaAssistant Professor of Molecular Biology, Princeton UniversityVerifisert e-postadresse på princeton.edu
Aebersold RETH ZurichVerifisert e-postadresse på imsb.biol.ethz.ch
Mattia ZampieriProfessor at the Department of Biomedicine, University of BaselVerifisert e-postadresse på unibas.ch
Olga T. SchubertGroup Leader at Eawag, lecturer at ETH ZurichVerifisert e-postadresse på eawag.ch
Stefan H.E. KaufmannDept. Immunology, Max Planck Institute for Infection BiologyVerifisert e-postadresse på mpiib-berlin.mpg.de
Hannes RöstAssistant Professor, University of TorontoVerifisert e-postadresse på utoronto.ca

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Michael Zimmermann

Group Leader, EMBL

Verifisert e-postadresse på embl.de - Startside

Microbiome Metabolomics Drug Therapy Microbiology Infectious disease


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Mapping human microbiome drug metabolism by gut bacteria and their genes M Zimmermann, M Zimmermann-Kogadeeva, R Wegmann, AL Goodman Nature 570 (7762), 462-467, 2019	804	2019
Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine BB Williams, AH Van Benschoten, P Cimermancic, MS Donia, ... Cell host & microbe 16 (4), 495-503, 2014	545	2014
Separating host and microbiome contributions to drug pharmacokinetics and toxicity M Zimmermann, M Zimmermann-Kogadeeva, R Wegmann, AL Goodman Science 363 (6427), eaat9931, 2019	324	2019
Fumarate Reductase Activity Maintains an Energized Membrane in Anaerobic Mycobacterium tuberculosis S Watanabe, M Zimmermann, MB Goodwin, U Sauer, CE Barry 3rd, ... PLoS pathogens 7 (10), e1002287, 2011	258	2011
Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis OT Schubert, C Ludwig, M Kogadeeva, M Zimmermann, G Rosenberger, ... Cell host & microbe 18 (1), 96-108, 2015	220	2015
Unravelling the collateral damage of antibiotics on gut bacteria L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ... Nature 599 (7883), 120-124, 2021	192	2021
Bioaccumulation of therapeutic drugs by human gut bacteria M Klünemann, S Andrejev, S Blasche, A Mateus, P Phapale, ... Nature 597 (7877), 533-538, 2021	187	2021
Engineered regulatory systems modulate gene expression of human commensals in the gut B Lim, M Zimmermann, NA Barry, AL Goodman Cell 169 (3), 547-558. e15, 2017	175	2017
Nontargeted metabolomics reveals the multilevel response to antibiotic perturbations M Zampieri, M Zimmermann, M Claassen, U Sauer Cell reports 19 (6), 1214-1228, 2017	155	2017
High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection J De Smet, M Zimmermann, M Kogadeeva, PJ Ceyssens, W Vermaelen, ... The ISME journal 10 (8), 1823-1835, 2016	142	2016
Antibodies set boundaries limiting microbial metabolite penetration and the resultant mammalian host response Y Uchimura, T Fuhrer, H Li, MA Lawson, M Zimmermann, B Yilmaz, ... Immunity 49 (3), 545-559. e5, 2018	134	2018
Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa A Chevallereau, BG Blasdel, J De Smet, M Monot, M Zimmermann, ... PLoS genetics 12 (7), e1006134, 2016	112	2016
Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice SY Wotzka, M Kreuzer, L Maier, M Arnoldini, BD Nguyen, AO Brachmann, ... Nature Microbiology 4 (12), 2164-2174, 2019	108	2019
A family of pyrazinone natural products from a conserved nonribosomal peptide synthetase in Staphylococcus aureus M Zimmermann, MA Fischbach Chemistry & biology 17 (9), 925-930, 2010	103	2010
Integration of metabolomics and transcriptomics reveals a complex diet of Mycobacterium tuberculosis during early macrophage infection M Zimmermann, M Kogadeeva, M Gengenbacher, G McEwen, ... MSystems 2 (4), 10.1128/msystems. 00057-17, 2017	97	2017
PknG senses amino acid availability to control metabolism and virulence of Mycobacterium tuberculosis B Rieck, G Degiacomi, M Zimmermann, A Cascioferro, F Boldrin, ... PLoS pathogens 13 (5), e1006399, 2017	89	2017
Towards a mechanistic understanding of reciprocal drug–microbiome interactions M Zimmermann, KR Patil, A Typas, L Maier Molecular systems biology 17 (3), e10116, 2021	71	2021
Quantification and mass isotopomer profiling of α-keto acids in central carbon metabolism M Zimmermann, U Sauer, N Zamboni Analytical chemistry 86 (6), 3232-3237, 2014	70	2014
Modulation of bacterial metabolism by the microenvironment controls MAIT cell stimulation M Schmaler, A Colone, J Spagnuolo, M Zimmermann, M Lepore, ... Mucosal immunology 11 (4), 1060-1070, 2018	66	2018
The stringent response determines the ability of a commensal bacterium to survive starvation and to persist in the gut WB Schofield, M Zimmermann-Kogadeeva, M Zimmermann, NA Barry, ... Cell host & microbe 24 (1), 120-132. e6, 2018	61	2018

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