Robert A McDougal
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Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.
RA McDougal, TM Morse, T Carnevale, L Marenco, R Wang, M Migliore, ...
Journal of computational neuroscience 42 (1), 1-10, 2017
NetPyNE, a tool for data-driven multiscale modeling of brain circuits
S Dura-Bernal, BA Suter, P Gleeson, M Cantarelli, A Quintana, ...
Elife 8, e44494, 2019
Open Source Brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, ...
Neuron 103 (3), 395-411. e5, 2019
Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data
SA Neymotin, DS Daniels, B Caldwell, RA McDougal, NT Carnevale, ...
eLife 9, e51214, 2020
Reaction-diffusion in the NEURON simulator
RA McDougal, ML Hines, WW Lytton
Front. Neuroinform 7 (28), 10.3389, 2013
Reproducibility in computational neuroscience models and simulations
RA McDougal, AS Bulanova, WW Lytton
IEEE Transactions on Biomedical Engineering 63 (10), 2021-2035, 2016
Alternative splicing regulates kv3. 1 polarized targeting to adjust maximal spiking frequency
Y Gu, J Barry, R McDougel, D Terman, C Gu
Journal of Biological Chemistry 287 (3), 1755-1769, 2012
Simulation neurotechnologies for advancing brain research: Parallelizing large networks in neuron
WW Lytton, AH Seidenstein, S Dura-Bernal, RA McDougal, F Schürmann, ...
Neural computation 28 (10), 2063-2090, 2016
Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model
SA Neymotin, RA McDougal, MA Sherif, CP Fall, ML Hines, WW Lytton
Neural computation 27 (4), 898-924, 2015
Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex
SA Neymotin, RA McDougal, AS Bulanova, M Zeki, P Lakatos, D Terman, ...
Neuroscience 316, 344-366, 2016
Using NEURON for Reaction-Diffusion modeling of extracellular dynamics
AJH Newton, RA McDougal, ML Hines, WW Lytton
Frontiers in neuroinformatics 12, 41, 2018
3D-printer visualization of neuron models
RA McDougal, GM Shepherd
Frontiers in neuroinformatics 9, 18, 2015
Neuron names: a gene-and property-based name format, with special reference to cortical neurons
GM Shepherd, L Marenco, ML Hines, M Migliore, RA McDougal, ...
Frontiers in neuroanatomy 13, 25, 2019
ModelView for ModelDB: Online Presentation of Model Structure
RA McDougal, TM Morse, ML Hines, GM Shepherd
Neuroinformatics 13 (4), 459-470, 2015
NTW-MT: a multi-threaded simulator for reaction diffusion simulations in NEURON
Z Lin, C Tropper, MN Ishlam Patoary, RA McDougal, WW Lytton, ...
Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced …, 2015
Water-tight membranes from neuronal morphology files
RA McDougal, ML Hines, WW Lytton
Journal of neuroscience methods 220 (2), 167-178, 2013
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions
L Marenco, R Wang, R McDougal, T Olender, M Twik, E Bruford, X Liu, ...
Database 2016, baw132, 2016
Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons
Z Lin, C Tropper, RA McDougal, MN Ishlam Patoary, WW Lytton, Y Yao, ...
ACM Transactions on Modeling and Computer Simulation (TOMACS) 27 (2), 7, 2017
Neuron time warp
MNI Patoary, C Tropper, Z Lin, R McDougal, WW Lytton
Proceedings of the Winter Simulation Conference 2014, 3447-3458, 2014
Reproducibility and Rigour in Computational Neuroscience
SM Crook, AP Davison, RA McDougal, HE Plesser
Frontiers in Neuroinformatics 14, 2020
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