Dagmar Waltemath
Dagmar Waltemath
Professor of Medical Informatics
Verified email at uni-greifswald.de - Homepage
Title
Cited by
Cited by
Year
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knupfer, D Waltemath, A Zhukova, A Drager, ...
Molecular Systems Biology 7 (543), 2011
2712011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 1-10, 2011
2322011
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
1362011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 1-9, 2014
992014
SED-ML–An XML Format for the Implementation of the MIASE Guidelines
D Köhn, N Le Novère
International Conference on Computational Methods in Systems Biology, 176-190, 2008
672008
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ...
Frontiers in bioengineering and biotechnology 3, 19, 2015
572015
A call for virtual experiments: accelerating the scientific process
J Cooper, JO Vik, D Waltemath
Progress in biophysics and molecular biology 117 (1), 99-106, 2015
562015
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
532016
The systems biology markup language (SBML): language specification for level 3 version 2 core
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ...
Journal of integrative bioinformatics 15 (1), 2018
502018
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
492020
Combining computational models, semantic annotations and simulation experiments in a graph database
R Henkel, O Wolkenhauer, D Waltemath
Database 2015, 2015
462015
How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine
D Waltemath, O Wolkenhauer
IEEE Transactions on Biomedical Engineering 63 (10), 1999-2006, 2016
432016
Ranked retrieval of computational biology models
R Henkel, L Endler, A Peters, N Le Novère, D Waltemath
BMC bioinformatics 11 (1), 1-12, 2010
382010
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
342019
Improving the reuse of computational models through version control
D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer
Bioinformatics 29 (6), 742-748, 2013
322013
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 2019
312019
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ...
Standards in genomic sciences 9 (3), 1285-1301, 2014
262014
An algorithm to detect and communicate the differences in computational models describing biological systems
M Scharm, O Wolkenhauer, D Waltemath
Bioinformatics 32 (4), 563-570, 2016
232016
Specifications of standards in systems and synthetic biology: status and developments in 2020
F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ...
Journal of integrative bioinformatics 17 (2-3), 2020
202020
Notions of similarity for systems biology models
R Henkel, R Hoehndorf, T Kacprowski, C Knüpfer, W Liebermeister, ...
Briefings in bioinformatics 19 (1), 77-88, 2018
192018
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