| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 385 | 2019 |
| GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms C Zhao, Z Wang Scientific reports 8 (1), 15107, 2018 | 104 | 2018 |
| TADKB: Family classification and a knowledge base of topologically associating domains T Liu, J Porter, C Zhao, H Zhu, N Wang, Z Sun, YY Mo, Z Wang BMC genomics 20, 1-17, 2019 | 41 | 2019 |
| PANDA: protein function prediction using domain architecture and affinity propagation Z Wang, C Zhao, Y Wang, Z Sun, N Wang Scientific reports 8 (1), 3484, 2018 | 34 | 2018 |
| PANDA2: protein function prediction using graph neural networks C Zhao, T Liu, Z Wang NAR genomics and bioinformatics 4 (1), lqac004, 2022 | 28 | 2022 |
| Predicting residue‐specific qualities of individual protein models using residual neural networks and graph neural networks C Zhao, T Liu, Z Wang Proteins: Structure, Function, and Bioinformatics 90 (12), 2091-2102, 2022 | 2 | 2022 |
| EGG: Accuracy Estimation of Individual Multimeric Protein Models Using Deep Energy-Based Models and Graph Neural Networks AJ Siciliano, C Zhao, T Liu, Z Wang International Journal of Molecular Sciences 25 (11), 6250, 2024 | 1 | 2024 |
| PANDA-3D: protein function prediction based on AlphaFold models ZW Chenguang Zhao, Tong Liu NAR Genomics and Bioinformatics 6 (3), lqae094, 2024 | | 2024 |
| Functional Similarities of Protein-Coding Genes in Topologically Associating Domains and Spatially-Proximate Genomic Regions C Zhao, T Liu, Z Wang Genes 13 (3), 480, 2022 | | 2022 |
| Deep Learning Approaches for Inferring Protein Model Qualities, Predicting Protein Functions, and Understanding the Relationships between 3D Genome and Protein Functions C Zhao University of Miami, 0 | | |
Zheng WangAssociate Professor, Department of Computer Science, University of MiamiVerifisert e-postadresse på miami.edu
