| VirSorter: mining viral signal from microbial genomic data S Roux, F Enault, BL Hurwitz, MB Sullivan PeerJ 3, e985, 2015 | 1080 | 2015 |
| Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019 | 536 | 2019 |
| Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit The ISME journal 11 (1), 237-247, 2017 | 385 | 2017 |
| Assessing the diversity and specificity of two freshwater viral communities through metagenomics S Roux, F Enault, A Robin, V Ravet, S Personnic, S Theil, J Colombet, ... PloS one 7 (3), e33641, 2012 | 261 | 2012 |
| Metavir 2: new tools for viral metagenome comparison and assembled virome analysis S Roux, J Tournayre, A Mahul, D Debroas, F Enault BMC bioinformatics 15, 1-12, 2014 | 260 | 2014 |
| WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs C Galiez, M Siebert, F Enault, J Vincent, J Söding Bioinformatics 33 (19), 3113-3114, 2017 | 252 | 2017 |
| Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee D Turner, AN Shkoporov, C Lood, AD Millard, BE Dutilh, P Alfenas-Zerbini, ... Archives of Virology 168 (2), 74, 2023 | 248 | 2023 |
| PHROG: families of prokaryotic virus proteins clustered using remote homology P Terzian, E Olo Ndela, C Galiez, J Lossouarn, RE Pérez Bucio, R Mom, ... NAR Genomics and Bioinformatics 3 (3), lqab067, 2021 | 225 | 2021 |
| Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads S Roux, M Krupovic, A Poulet, D Debroas, F Enault PloS one 7 (7), e40418, 2012 | 207 | 2012 |
| Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ... Archives of virology 165 (5), 1253-1260, 2020 | 191 | 2020 |
| Metavir: a web server dedicated to virome analysis S Roux, M Faubladier, A Mahul, N Paulhe, A Bernard, D Debroas, ... Bioinformatics 27 (21), 3074-3075, 2011 | 184 | 2011 |
| Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget–France) D Debroas, JF Humbert, F Enault, G Bronner, M Faubladier, E Cornillot Environmental microbiology 11 (9), 2412-2424, 2009 | 153 | 2009 |
| Analysis of spounaviruses as a case study for the overdue reclassification of tailed phages J Barylski, F Enault, BE Dutilh, MBP Schuller, RA Edwards, A Gillis, ... Systematic biology 69 (1), 110-123, 2020 | 145 | 2020 |
| Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences S Roux, M Krupovic, D Debroas, P Forterre, F Enault Open biology 3 (12), 130160, 2013 | 142 | 2013 |
| Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee M Krupovic, BE Dutilh, EM Adriaenssens, J Wittmann, FK Vogensen, ... Archives of virology 161 (4), 1095-1099, 2016 | 117 | 2016 |
| Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses S Roux, F Enault, G Bronner, D Vaulot, P Forterre, M Krupovic Nature communications 4 (1), 2700, 2013 | 110 | 2013 |
| Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, J Wittmann, JH Kuhn, D Turner, MB Sullivan, BE Dutilh, ... Archives of virology 163 (4), 1125-1129, 2018 | 107 | 2018 |
| Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis F Enault, K Suhre, JM Claverie BMC bioinformatics 6 (1), 247, 2005 | 84 | 2005 |
| Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems S Roux, F Enault, G le Bronner, D Debroas FEMS microbiology ecology 78 (3), 617-628, 2011 | 82 | 2011 |
| Expanding known viral diversity in the healthy infant gut SA Shah, L Deng, J Thorsen, AG Pedersen, MB Dion, JL Castro-Mejía, ... Nature microbiology 8 (5), 986-998, 2023 | 69 | 2023 |
