marcin p. joachimiak
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KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), e16, 2007
Co-evolution of proteins with their interaction partners
CS Goh, AA Bogan, M Joachimiak, D Walther, FE Cohen
Journal of molecular biology 299 (2), 283-293, 2000
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparumwith a long-oligonucleotide microarray
Z Bozdech, J Zhu, MP Joachimiak, FE Cohen, B Pulliam, JL DeRisi
Genome biology 4, 1-15, 2003
The National COVID Cohort Collaborative (N3C): rationale, design, infrastructure, and deployment
MA Haendel, CG Chute, TD Bennett, DA Eichmann, J Guinney, WA Kibbe, ...
Journal of the American Medical Informatics Association 28 (3), 427-443, 2021
How many rare diseases are there?
M Haendel, N Vasilevsky, D Unni, C Bologa, N Harris, H Rehm, ...
Nature reviews drug discovery 19 (2), 77-78, 2020
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ...
Nucleic acids research 48 (D1), D704-D715, 2020
Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough
A Mukhopadhyay, AM Redding, MP Joachimiak, AP Arkin, SE Borglin, ...
Journal of bacteriology 189 (16), 5996-6010, 2007
JColorGrid: software for the visualization of biological measurements
MP Joachimiak, JL Weisman, BCH May
BMC bioinformatics 7, 1-5, 2006
Effects of genetic variation on the E. coli host-circuit interface
S Cardinale, MP Joachimiak, AP Arkin
Cell reports 4 (2), 231-237, 2013
Zinc against COVID-19? Symptom surveillance and deficiency risk groups
MP Joachimiak
PLoS neglected tropical diseases 15 (1), e0008895, 2021
KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
JT Reese, D Unni, TJ Callahan, L Cappelletti, V Ravanmehr, S Carbon, ...
Patterns 2 (1), 2021
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris
Q He, Z He, DC Joyner, M Joachimiak, MN Price, ZK Yang, HCB Yen, ...
The ISME Journal 4 (11), 1386-1397, 2010
Functional responses of methanogenic archaea to syntrophic growth
CB Walker, AM Redding-Johanson, EE Baidoo, L Rajeev, Z He, ...
The ISME journal 6 (11), 2045-2055, 2012
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state
ME Clark, Z He, AM Redding, MP Joachimiak, JD Keasling, JZ Zhou, ...
BMC genomics 13, 1-17, 2012
Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation
Z He, A Zhou, E Baidoo, Q He, MP Joachimiak, P Benke, R Phan, ...
Applied and Environmental Microbiology 76 (5), 1574-1586, 2010
Application of phenotypic microarrays to environmental microbiology
S Borglin, D Joyner, KM DeAngelis, J Khudyakov, P D’haeseleer, ...
Current opinion in biotechnology 23 (1), 41-48, 2012
Hydrogen peroxide‐induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough
A Zhou, Z He, AM Redding‐Johanson, A Mukhopadhyay, CL Hemme, ...
Environmental Microbiology 12 (10), 2645-2657, 2010
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