Thomas King-Fung Wong
Thomas King-Fung Wong
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ModelFinder: fast model selection for accurate phylogenetic estimates
S Kalyaanamoorthy, BQ Minh, TKF Wong, A Von Haeseler, LS Jermiin
Nature methods 14 (6), 587-589, 2017
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
SOAP3: Ultra-fast GPU-based parallel alignment tool for short reads
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics, 2012
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil
WT Tay, TK Walsh, S Downes, C Anderson, LS Jermiin, TKF Wong, ...
Scientific Reports 7 (1), 45302, 2017
Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages
V Jayaswal, TKF Wong, J Robinson, L Poladian, LS Jermiin
Systematic biology 63 (5), 726-742, 2014
A minimum reporting standard for multiple sequence alignments
TKF Wong, S Kalyaanamoorthy, K Meusemann, DK Yeates, B Misof, ...
NAR genomics and bioinformatics 2 (2), lqaa024, 2020
Promoter-sharing by different genes in human genome – CPNE1 and RBM12 gene pair as an example
W Yang, P Ng, M Zhao, TKF Wong, SM Yiu, YL Lau
BMC genomics 9, 1-16, 2008
Structural alignment of RNA with complex pseudoknot structure
TKF Wong, TW Lam, WK Sung, BWY Cheung, SM Yiu
Journal of Computational Biology 18 (1), 97-108, 2011
SOAP3: GPU-based Compressed Indexing and Ultra-fast Parallel Alignment of Short Reads
CM Liu, TW Lam, KF Wong, EMK Wu, SM Yiu, Z Li, R Luo, B Wang, C Yu, ...
Third Workshop on Massive Data Algorithmics (MASSIVE 2011), 2011
Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads
L Ranjard, TKF Wong, C Külheim, AG Rodrigo, NLC Ragg, S Patel, ...
Mitochondrial DNA Part B 3 (1), 175-176, 2018
Memory efficient algorithms for structural alignment of RNAs with pseudoknots
TKF Wong, YS Chiu, TW Lam, SM Yiu
IEEE/ACM transactions on computational biology and bioinformatics 9 (1), 161-168, 2011
MAST: Phylogenetic inference with mixtures across sites and trees
TKF Wong, C Cherryh, AG Rodrigo, MW Hahn, BQ Minh, R Lanfear
Systematic Biology, syae008, 2024
RNASAlign: RNA structural alignment system
TKF Wong, KL Wan, BY Hsu, BWY Cheung, WK Hon, TW Lam, SM Yiu
Bioinformatics 27 (15), 2151-2152, 2011
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data
X Hu, TKF Wong, ZJ Lu, TF Chan, TCK Lau, SM Yiu, KY Yip
Bioinformatics 30 (8), 1049-1055, 2014
Structural alignment of RNA with triple helix structure
TKF Wong, SM Yiu
Journal of Computational Biology 19 (4), 365-378, 2012
DecentTree: scalable Neighbour-Joining for the genomic era
W Wang, J Barbetti, T Wong, B Thornlow, R Corbett-Detig, Y Turakhia, ...
Bioinformatics 39 (9), btad536, 2023
Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification
TKF Wong, TW Lam, WK Sung, SM Yiu
PLoS One 5 (9), e12848, 2010
A memory efficient algorithm for structural alignment of RNAs with embedded simple pseudoknots
T Wong, YS Chiu, TW Lam, SM Yiu
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 89-99, 2008
Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation …
L Ranjard, TKF Wong, AG Rodrigo
PLoS One 13 (4), e0195090, 2018
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